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[173376_s_at]

Description AV199166_rc /REP_DB=TREMBL Accession /GB=AV199166 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 35      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 41      6grp_total > 36      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 810.6
(-0.4)
P 		1159.2
(3)
P 		689.4
(-1.6)
P 		540.7
(-3)
P 		619
B 820.1
(0.8)
P 		819.1
(0.8)
P 		981.5
(3)
P 		531.1
(-3)
P 		450
C 950.6
(3)
P 		787.7
(-0.6)
P 		829.4
(0.3)
P 		678.2
(-3)
P 		272
avr 860.4
(1.9) 		922
(3) 		833.4
(1.4) 		583.3
(-3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 862.2
(0.5)
P 		1052.3
(3)
P 		638.3
(-2.4)
P 		621.9
(-2.6)
P 		588.5
(-3)
P 		808.9
(-0.1)
P 		464
B 838.2
(1.6)
P 		805.7
(1.1)
P 		920.7
(3)
P 		594.5
(-2.5)
P 		565.9
(-3)
P 		785.7
(0.7)
P 		355
C 919.1
(1.9)
P 		992.3
(3)
P 		697.1
(-1.2)
P 		574.7
(-3)
P 		592.9
(-2.7)
P 		833.2
(0.7)
P 		418
avr 873.2
(1.7) 		950.1
(3) 		752
(-0.2) 		597
(-2.8) 		582.4
(-3) 		809.3
(0.7) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 295.1
(3)
P 		251.6
(1.8)
P 		180.2
(-0.2)
P 		79.1
(-3)
P 		216
B 261.5
(3)
P 		202.3
(0.6)
P 		227.4
(1.6)
P 		113.2
(-3)
P 		148
C 314.7
(3)
P 		226.5
(0.4)
P 		289.1
(2.2)
P 		114.4
(-3)
P 		200
avr 290.4
(3) 		226.8
(1) 		232.2
(1.1) 		102.2
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 158.9
(-2.5)
P 		374.3
(3)
P 		139
(-3)
P 		157.7
(-2.5)
P 		177.6
(-2)
P 		197
(-1.5)
P 		235
B 291.6
(2.9)
P 		268.2
(1.9)
P 		223.6
(-0.1)
P 		157.5
(-3)
P 		229.9
(0.2)
P 		293
(3)
P 		136
C 340.7
(3)
P 		302.8
(2)
P 		177.4
(-1.4)
P 		115.6
(-3)
P 		191.8
(-1)
P 		278.9
(1.4)
P 		225
avr 263.7
(1.2) 		315.1
(3) 		180
(-1.7) 		143.6
(-3) 		199.8
(-1) 		256.3
(0.9) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173376_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27676
Sequence Type Exemplar sequence
Representative Public ID AV199166 NCBI
Target Description AV199166_rc /REP_DB=TREMBL Accession /GB=AV199166 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027766(11), NM_001027767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027766 NCBI Caenorhabditis elegans Y71H2B.10a (apb-1) mRNA, complete cds. 11/11 None
NM_001027767 NCBI Caenorhabditis elegans Y71H2B.10b (apb-1) mRNA, complete cds. 11/11 None
SNAP00000014007 ENSEMBL cdna:SNAP chromosome:CEL140:III:2584195:2618684:-1 11/11 None
GENEFINDER00000014045 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2584195:2585495:-1 11/11 None
Y71H2B.10a ENSEMBL cdna:known chromosome:CEL140:III:2583973:2597011:-1 gene:Y71H2B.10 11/11 A 
Y71H2B.10b ENSEMBL cdna:known chromosome:CEL140:III:2584195:2597011:-1 gene:Y71H2B.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181980 2/11 Cross Hyb Matching Probes None
Y32H12A.9 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175376 3 2 NM_001027766 173376_s_at (11), 187113_at (11)
NM_001027767 173376_s_at (11)
NM_001027768 187113_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2584022-2584639(-) 93.85 93.85
Public Domain and Genome References
Ensembl Y71H2B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36038 C. elegans APB-1 protein, isoform a [Caenorhabditis elegans] ref|NP_001022937.1| Y71H2B.10a [Caenorhabditis elegans] 0.0
blast CAE64987 Hypothetical protein CBG09822 [Caenorhabditis briggsae] 0.0
blast AAP86609 C. elegans APB-1 protein, isoform c [Caenorhabditis elegans] ref|NP_001022939.1| Y71H2B.10c [Caenorhabditis elegans] 0.0
blast AAP86608 C. elegans APB-1 protein, isoform b [Caenorhabditis elegans] ref|NP_001022938.1| Y71H2B.10b [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.8E-6
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 7.4E-33
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:173376_S_AT
atatgaatgctgacgcaatttgcacgaaantacaacaaaacaacattcatacggtggcac
ggcgacaagttgacaatcaacaacttttgtatcattctgtcaagtatacgaacaatttga
atgtgctctcagagctcaaagtcaactcacagaccacgtcgattacgctctccctaaaat
cgaagaatctgatggcgattgcaaacatcaatgaagtattccaagcgcttctcaact

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGAATGCTGACGCAATTTGCAC 504 21 25 Antisense
ACAACATTCATACGGTGGCACGGCG 9 113 64 Antisense
GTGGCACGGCGACAAGTTGACAATC 338 491 78 Antisense
ACAACTTTTGTATCATTCTGTCAAG 343 113 104 Antisense
ACGAACAATTTGAATGTGCTCTCAG 154 91 132 Antisense
GTGCTCTCAGAGCTCAAAGTCAACT 272 479 147 Antisense
AAAGTCAACTCACAGACCACGTCGA 552 121 162 Antisense
ACTCACAGACCACGTCGATTACGCT 82 101 169 Antisense
GATTACGCTCTCCCTAAAATCGAAG 235 429 185 Antisense
GAATCTGATGGCGATTGCAAACATC 352 329 209 Antisense
GAAGTATTCCAAGCGCTTCTCAACT 84 337 237 Antisense
Sequence Source Affymetrix Proprietary Database