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[173375_s_at] 60S ribosomal protein L15

Description AV181281_rc /REP_DB=TREMBL Accession /GB=AV181281 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk618c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 09      6grp_total > 50      4grp_total > 09      6grp_highest_sub > 04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19099
1 2 3 4 range
A 26355.2
(-3)
P 		30754.9
(-1.5)
P 		31746.7
(-1.2)
P 		43919
(3)
P 		17564
B 28825
(-2.6)
P 		28372.5
(-3)
P 		34797.6
(2.7)
P 		35149.1
(3)
P 		6777
C 27360.1
(-2)
P 		28065.9
(-1.8)
P 		24819.9
(-3)
P 		40695
(3)
P 		15875
avr 27513.4
(-3) 		29064.4
(-2.2) 		30454.7
(-1.6) 		39921
(3) 		12408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12235
1 2 3 4 5 6 range
A 30384.6
(3)
P 		24524.1
(-1.4)
P 		26284.9
(-0.1)
P 		28807.8
(1.8)
P 		22455.4
(-3)
P 		26599.3
(0.1)
P 		7929
B 24409.8
(3)
P 		23693.4
(2.1)
P 		23241.1
(1.5)
P 		23641.5
(2)
P 		20543.2
(-1.9)
P 		19652.6
(-3)
P 		4757
C 22715.7
(-2.4)
P 		24811.8
(-1.2)
P 		28315.8
(0.9)
P 		31887.1
(3)
P 		22935.7
(-2.3)
P 		21768.6
(-3)
P 		10119
avr 25836.7
(0.8) 		24343.1
(-0.7) 		25947.3
(0.9) 		28112.1
(3) 		21978.1
(-3) 		22673.5
(-2.3) 		6134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3167
1 2 3 4 range
A 9595.9
(3)
P 		6676.1
(-2.5)
P 		8299.2
(0.5)
P 		6428.9
(-3)
P 		3167
B 9192.1
(3)
P 		7007.3
(-3)
P 		8063.4
(-0.1)
P 		7490.3
(-1.7)
P 		2185
C 9057
(3)
P 		8069.1
(0.3)
P 		8650.5
(1.9)
P 		6861.8
(-3)
P 		2195
avr 9281.7
(3) 		7250.8
(-2.2) 		8337.7
(0.6) 		6927
(-3) 		2355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3121
1 2 3 4 5 6 range
A 5601.2
(-3)
P 		8722
(3)
P 		5724.3
(-2.8)
P 		7306.3
(0.3)
P 		6776.1
(-0.7)
P 		6476.1
(-1.3)
P 		3121
B 8493.4
(3)
P 		7886.6
(1.7)
P 		5643.6
(-3)
P 		6261.8
(-1.7)
P 		8346.4
(2.7)
P 		7328.4
(0.5)
P 		2850
C 8419.7
(3)
P 		7570.8
(0.5)
P 		7206.9
(-0.6)
P 		6412.5
(-3)
P 		7421.7
(0)
P 		7287.2
(-0.4)
P 		2007
avr 7504.8
(1.2) 		8059.8
(3) 		6191.6
(-3) 		6660.2
(-1.5) 		7514.7
(1.2) 		7030.6
(-0.3) 		1868
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173375_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27635
Sequence Type Exemplar sequence
Representative Public ID AV181281 NCBI
Target Description AV181281_rc /REP_DB=TREMBL Accession /GB=AV181281 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk618c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067563 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-15) (rpl-15) mRNA, complete cds. 11/11 A 
SNAP00000015761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:653538:654571:-1 11/11 None
GENEFINDER00000015772 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:653538:654571:-1 11/11 None
K11H12.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654582:-1 gene:K11H12.2 11/11 A 
K11H12.2.3 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654750:-1 gene:K11H12.2 11/11 A 
K11H12.2.4 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654696:-1 gene:K11H12.2 11/11 A 
K11H12.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:653438:654576:-1 gene:K11H12.2 11/11 A 
K11H12.2.5 ENSEMBL cdna:known chromosome:CEL140:IV:653475:654578:-1 gene:K11H12.2 11/11 None
K11H12.2.6 ENSEMBL cdna:known chromosome:CEL140:IV:653475:654749:-1 gene:K11H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:653567-653830(-) 77.31 77.31
Public Domain and Genome References
Gene Title 60S ribosomal protein L15
Gene Symbol rpl-15
Ensembl K11H12.2
Entrez Gene 176891 Entrez gene
SwissProt P91374 EMBL-EBI
WormBase CE12148 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16926_AT 60S ribosomal protein L15 (RPL15B) at
ATH1-121501:245355_AT 60S ribosomal protein L15 (RPL15B) at
CANINE:1583586_X_AT similar to ribosomal protein L15 cfa
CANINE:1584926_X_AT similar to ribosomal protein L15 cfa
CANINE:1599415_AT similar to ribosomal protein L15 cfa
CANINE:1588280_AT similar to ribosomal protein L15 cfa
CANINE:1585065_X_AT similar to ribosomal protein L15 cfa
CANINE:1585048_X_AT similar to ribosomal protein L15 cfa
CANINE:1583368_X_AT similar to ribosomal protein L15 cfa
CANINE_2:CFA.4501.1.A1_S_AT similar to ribosomal protein L15 cfa
CHICKEN:GGA.4855.1.S1_AT ribosomal protein L15 gga
HG-U95AV2:32432_F_AT ribosomal protein L15 hs
HG-U95AV2:32433_AT ribosomal protein L15 hs
HG-U133_PLUS_2:221475_S_AT ribosomal protein L15 hs
HG-U133A_2:221475_S_AT ribosomal protein L15 hs
HG-U133A:221475_S_AT ribosomal protein L15 hs
HG-U133A:221476_S_AT ribosomal protein L15 hs
HG-U133_PLUS_2:221476_S_AT ribosomal protein L15 hs
HG-U133A_2:221476_S_AT ribosomal protein L15 hs
HG-FOCUS:221476_S_AT ribosomal protein L15 hs
HG-U133_PLUS_2:217266_AT ribosomal protein L15 hs
HG-U133A_2:217266_AT ribosomal protein L15 hs
HG-U133A:217266_AT ribosomal protein L15 hs
HU35KSUBC:RC_D51284_F_AT ribosomal protein L15 hs
HU35KSUBC:RC_C14094_F_AT ribosomal protein L15 hs
HU35KSUBD:RC_AA600026_AT ribosomal protein L15 hs
U133_X3P:G12006349_3P_A_AT ribosomal protein L15 hs
U133_X3P:HS.74267.0.S1_3P_S_AT ribosomal protein L15 hs
U133_X3P:HS.247851.0.S1_3P_X_AT ribosomal protein L15 hs
U133_X3P:HS.247851.0.S1_3P_AT ribosomal protein L15 hs
HG-U95B:48807_AT ribosomal protein L15 hs
HG-U95C:63705_F_AT ribosomal protein L15 hs
HG-U95C:63906_F_AT ribosomal protein L15 hs
HG-U95E:87923_AT ribosomal protein L15 hs
U133_X3P:HS2.384567.1.S1_3P_AT Ribosomal protein L15 hs
U133_X3P:HS.134772.0.A1_3P_AT Ribosomal protein L15 hs
HG-U133_PLUS_2:1563348_AT Ribosomal protein L15 hs
HG-U133_PLUS_2:240806_AT Ribosomal protein L15 hs
HG-U133B:240806_AT Ribosomal protein L15 hs
HG-U95D:78690_AT Ribosomal protein L15 hs
HG-U95D:90906_AT Ribosomal protein L15 hs
MU11KSUBB:W13172_S_AT ribosomal protein L15 mm
MOE430A:1434328_AT ribosomal protein L15 mm
MOUSE430A_2:1434328_AT ribosomal protein L15 mm
MOUSE430_2:1434328_AT ribosomal protein L15 mm
MOE430A:1449255_A_AT ribosomal protein L15 mm
MOUSE430A_2:1449255_A_AT ribosomal protein L15 mm
MOUSE430_2:1449255_A_AT ribosomal protein L15 mm
MU19KSUBC:TC39717_AT Ribosomal protein L15 (Rpl15), mRNA mm
RG-U34A:X78167_AT ribosomal protein L15 rn
RAE230A:1398315_AT ribosomal protein L15 rn
RAT230_2:1398315_AT ribosomal protein L15 rn
YEAST_2:1774255_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein; binds to 5.8 S rRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_499964 Ribosomal Protein, Large subunit family member (rpl-15) [Caenorhabditis elegans] gb|AAC24397.1| Ribosomal protein, large subunit protein 15 [Caenorhabditis elegans] sp|P91374|RL15_CAEEL 60S ribosomal protein L15 1.0E-107
blast CAE73732 Hypothetical protein CBG21258 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR000439 EMBL-EBI Ribosomal protein L15e 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173375_S_AT
tgttctcaactcctactgggttgctgaggactccacctacaagttctacgaggttgtcct
gatcgatccattccacaaggctatccgtcgtaacccagacacccaatggatcaccaagcc
agttcacaagcaccgtgagcaaagaggactcacctctgctggacgcaagtctcgtggact
cggaaagggatggcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCAACTCCTACTGGGTTGCT 592 561 58 Antisense
CTACTGGGTTGCTGAGGACTCCACC 111 225 70 Antisense
GACTCCACCTACAAGTTCTACGAGG 354 373 86 Antisense
GTTCTACGAGGTTGTCCTGATCGAT 483 441 100 Antisense
TCCTGATCGATCCATTCCACAAGGC 532 593 114 Antisense
TTCCACAAGGCTATCCGTCGTAACC 708 695 128 Antisense
CCAATGGATCACCAAGCCAGTTCAC 18 277 160 Antisense
GCCAGTTCACAAGCACCGTGAGCAA 106 281 175 Antisense
CAAAGAGGACTCACCTCTGCTGGAC 414 191 197 Antisense
TCTGCTGGACGCAAGTCTCGTGGAC 429 607 212 Antisense
GTGGACTCGGAAAGGGATGGCGTTT 572 481 231 Antisense
Sequence Source Affymetrix Proprietary Database