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[173374_s_at]

Description AV177734_rc /REP_DB=TREMBL Accession /GB=AV177734 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 13      6grp_total > 34      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2920
1 2 3 4 range
A 2879.7
(-1.3)
P 		4248.4
(2.9)
P 		4291.9
(3)
P 		2325.3
(-3)
P 		1967
B 3012.5
(-0.6)
P 		3783.8
(1)
P 		4722
(3)
P 		1904
(-3)
P 		2818
C 3021.7
(0.1)
P 		4022.3
(2.6)
P 		4178.1
(3)
P 		1802.4
(-3)
P 		2376
avr 2971.3
(-0.6) 		4018.2
(2) 		4397.3
(3) 		2010.6
(-3) 		2387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2337
1 2 3 4 5 6 range
A 3354.5
(2.4)
P 		2792.5
(0.9)
P 		3602.4
(3)
P 		1773.8
(-1.8)
P 		1597.7
(-2.2)
P 		1305.8
(-3)
P 		2297
B 3643.2
(3)
P 		3421
(2.3)
P 		3596.5
(2.8)
P 		2101.7
(-2)
P 		1790
(-3)
P 		1823.4
(-2.9)
P 		1853
C 3547.5
(3)
P 		3211.7
(2.1)
P 		2464.4
(0)
P 		1832.1
(-1.7)
P 		1753.1
(-1.9)
P 		1348.9
(-3)
P 		2199
avr 3515.1
(3) 		3141.7
(1.9) 		3221.1
(2.1) 		1902.5
(-1.8) 		1713.6
(-2.3) 		1492.7
(-3) 		2022
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1152
1 2 3 4 range
A 1048.5
(2.4)
P 		922.2
(1.5)
P 		1122
(3)
P 		340.4
(-3)
P 		782
B 960.7
(1.8)
P 		934.5
(1.6)
P 		1094.2
(3)
P 		405.7
(-3)
P 		689
C 1000.3
(0.6)
P 		1156.4
(1.4)
P 		1456.2
(3)
P 		303.9
(-3)
P 		1152
avr 1003.2
(1.5) 		1004.4
(1.5) 		1224.1
(3) 		350
(-3) 		874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 997
1 2 3 4 5 6 range
A 618.4
(-0.3)
P 		993.1
(3)
P 		784.5
(1.1)
P 		449.9
(-1.8)
P 		482.1
(-1.5)
P 		317.9
(-3)
P 		675
B 1267.7
(3)
P 		1138.7
(1.9)
P 		873.3
(-0.3)
P 		556.7
(-3)
P 		727.3
(-1.6)
P 		679.9
(-2)
P 		711
C 1314.9
(3)
P 		980
(0.9)
P 		627.2
(-1.4)
P 		368.4
(-3)
P 		567.3
(-1.7)
P 		451.6
(-2.5)
P 		947
avr 1067
(3) 		1037.3
(2.7) 		761.7
(-0) 		458.3
(-3) 		592.2
(-1.7) 		483.1
(-2.8) 		609
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173374_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27778
Sequence Type Exemplar sequence
Representative Public ID AV177734 NCBI
Target Description AV177734_rc /REP_DB=TREMBL Accession /GB=AV177734 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065425 NCBI Caenorhabditis elegans C16C10.11 (C16C10.11) mRNA, complete cds. 11/11 A 
SNAP00000043767 ENSEMBL cdna:SNAP chromosome:CEL140:III:4152028:4152656:1 11/11 None
GENEFINDER00000043789 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4152028:4152656:1 11/11 None
C16C10.11 ENSEMBL cdna:known chromosome:CEL140:III:4152023:4152872:1 gene:C16C10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4152523-4152765(+) 77.74 77.74
Public Domain and Genome References
Gene Title
Ensembl C16C10.11
Entrez Gene 175529 Entrez gene
SwissProt Q09254 EMBL-EBI
WormBase CE01491 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583683_AT similar to Coiled-coil-helix-coiled-coil-helix domain containing protein 2 (HCV NS2 trans-regulated protein) (NS2TP) cfa
CANINE_2:CFA.1458.1.S1_AT similar to Coiled-coil-helix-coiled-coil-helix domain containing protein 2 (HCV NS2 trans-regulated protein) (NS2TP) cfa
CANINE_2:CFAAFFX.15927.1.S1_AT similar to Coiled-coil-helix-coiled-coil-helix domain containing protein 2 (HCV NS2 trans-regulated protein) (NS2TP) cfa
CANINE_2:CFAAFFX.15927.1.S1_S_AT similar to Coiled-coil-helix-coiled-coil-helix domain containing protein 2 (HCV NS2 trans-regulated protein) (NS2TP) cfa
DROSOPHILA_2:1628589_AT dm
DROSGENOME1:145230_AT dm
CHICKEN:GGAAFFX.12348.1.S1_S_AT coiled-coil-helix-coiled-coil-helix domain containing 2 gga
HG-U133A:217720_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
HG-U133_PLUS_2:217720_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
HG-FOCUS:217720_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
HG-U133A_2:217720_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
HU35KSUBB:RC_W38162_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
U133_X3P:G7705850_3P_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
HG-U95B:57076_AT coiled-coil-helix-coiled-coil-helix domain containing 2 hs
MOUSE430A_2:1450815_S_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MOE430A:1450815_S_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MOUSE430_2:1450815_S_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MU11KSUBB:W13800_S_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MG-U74CV2:168789_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MOE430A:1428161_A_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MOUSE430A_2:1428161_A_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MOUSE430_2:1428161_A_AT coiled-coil-helix-coiled-coil-helix domain containing 2 mm
MU11KSUBB:W13800_S_AT similar to coiled-coil-helix-coiled-coil-helix domain containing 2 mm
RG-U34C:RC_AA819905_AT coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted) rn
RAE230A:1371312_AT coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted) rn
RAT230_2:1371312_AT coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA86749 Hypothetical protein C16C10.11 [Caenorhabditis elegans] ref|NP_497826.1| C16C10.11 [Caenorhabditis elegans] sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III 4.0E-41
blast CAE72871 Hypothetical protein CBG20173 [Caenorhabditis briggsae] 1.0E-36
blast EAA12081 ENSANGP00000013101 [Anopheles gambiae str. PEST] ref|XP_316875.2| ENSANGP00000013101 [Anopheles gambiae str. PEST] 8.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR010625 EMBL-EBI CHCH 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:173374_S_AT
tggctactcgcagccatgcgaattcgagtggagacaatttgtggactgcgcacaaaacca
atctgatgtttctctgtgcaacggattcaatgatattttcaagcaatgcaaggccagata
tgcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTACTCGCAGCCATGCGAATTC 366 545 24 Antisense
CGCAGCCATGCGAATTCGAGTGGAG 44 255 32 Antisense
GCCATGCGAATTCGAGTGGAGACAA 201 281 36 Antisense
GTGGAGACAATTTGTGGACTGCGCA 284 491 51 Antisense
GGACTGCGCACAAAACCAATCTGAT 360 525 66 Antisense
ACCAATCTGATGTTTCTCTGTGCAA 221 85 80 Antisense
AATCTGATGTTTCTCTGTGCAACGG 640 169 83 Antisense
TCTCTGTGCAACGGATTCAATGATA 608 611 94 Antisense
GCAACGGATTCAATGATATTTTCAA 50 321 101 Antisense
GATATTTTCAAGCAATGCAAGGCCA 288 425 115 Antisense
GCAATGCAAGGCCAGATATGCCTAA 415 319 126 Antisense
Sequence Source Affymetrix Proprietary Database