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[173373_s_at]

Description AV182830_rc /REP_DB=TREMBL Accession /GB=AV182830 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 0      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 137.8
(-3)
P 		154.2
(-1.6)
P 		183.8
(0.9)
P 		207.8
(3)
P 		70
B 158.1
(-0.3)
P 		96.4
(-3)
P 		145.5
(-0.8)
P 		231.5
(3)
P 		135
C 149.9
(0.8)
P 		91.9
(-3)
P 		144.8
(0.5)
P 		183.3
(3)
P 		91
avr 148.6
(-0.8) 		114.2
(-3) 		158
(-0.2) 		207.5
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 118.7
(-3)
P 		121.5
(-3)
P 		176.6
(-2.1)
P 		181
(-2)
P 		221.7
(-1.3)
P 		491.1
(3)
P 		372
B 147.7
(-3)
P 		180.3
(-2.6)
P 		177.3
(-2.6)
P 		149.4
(-3)
P 		294.9
(-1)
P 		595.1
(3)
P 		447
C 123.4
(-2.6)
P 		94.1
(-3)
P 		113.2
(-2.8)
P 		202.5
(-1.7)
P 		384.4
(0.5)
P 		591.3
(3)
P 		497
avr 129.9
(-3) 		132
(-3) 		155.7
(-2.6) 		177.6
(-2.3) 		300.3
(-0.6) 		559.2
(3) 		429
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 50.2
(3)
P 		33.5
(-2.1)
P 		48.1
(2.4)
P 		30.4
(-3)
P 		20
B 50.4
(3)
P 		23.8
(-3)
P 		33.7
(-0.8)
P 		49.3
(2.8)
P 		27
C 49.6
(2.8)
P 		26.4
(-3)
P 		50.5
(3)
P 		30.9
(-1.9)
P 		24
avr 50.1
(3) 		27.9
(-3) 		44.1
(1.4) 		36.9
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 21.9
(-3)
P 		43.2
(-1.7)
P 		38.5
(-2)
P 		45.9
(-1.5)
P 		66.9
(-0.2)
P 		119.6
(3)
P 		98
B 51.4
(-2.6)
P 		60
(-2.3)
P 		43.1
(-2.9)
P 		39.6
(-3)
P 		119.8
(-0.4)
P 		221.9
(3)
P 		182
C 45.7
(-2.4)
P 		28.7
(-3)
P 		28.8
(-3)
P 		40.7
(-2.6)
P 		124.4
(0.4)
P 		197.9
(3)
P 		169
avr 39.7
(-2.9) 		44
(-2.7) 		36.8
(-3) 		42.1
(-2.8) 		103.7
(-0.2) 		179.8
(3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173373_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27955
Sequence Type Exemplar sequence
Representative Public ID AV182830 NCBI
Target Description AV182830_rc /REP_DB=TREMBL Accession /GB=AV182830 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060969 NCBI Caenorhabditis elegans Y48G10A.2 (Y48G10A.2) mRNA, complete cds. 11/11 A 
SNAP00000010014 ENSEMBL cdna:SNAP chromosome:CEL140:I:13463641:13496537:-1 9/11 None
GENEFINDER00000010017 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13485500:13497045:-1 10/11 None
Y48G10A.2 ENSEMBL cdna:known chromosome:CEL140:I:13485451:13495530:-1 gene:Y48G10A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13485376-13488266(-) 87.62 87.62
Public Domain and Genome References
Gene Title
Ensembl Y48G10A.2
Entrez Gene 173218 Entrez gene
SwissProt Q9U284 EMBL-EBI
WormBase CE25313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 0.0
blast CAB63373 Hypothetical protein Y48G10A.4 [Caenorhabditis elegans] ref|NP_493368.1| Y48G10A.4 [Caenorhabditis elegans] 0.0
blast CAE63537 Hypothetical protein CBG08018 [Caenorhabditis briggsae] 0.0
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 1.0E-56
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 5.0E-55
blast AAA79349 Hypothetical protein F09E5.9 [Caenorhabditis elegans] ref|NP_494999.1| F09E5.9 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 9.8E-42
Pfam IPR004142 EMBL-EBI Ndr family 6.5E-122
Sequence
Target Sequence 
>C. ELEGANS:173373_S_AT
gaagggacagatcaaaagcgagaattacacatcaattgctgtaactcgactttacaaaat
gcttattcgaactgagccaaaggagacagcattacgccgtgccgcagattatttgaatga
gctcacccatagtaaaactgaaaagaaggcagttatcgagtatatggaggagaagcattc
cattaagtggccagagcacatcatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGACAGATCAAAAGCGAGAAT 562 335 38 Antisense
AGCGAGAATTACACATCAATTGCTG 107 79 54 Antisense
AATGCTTATTCGAACTGAGCCAAAG 5 165 95 Antisense
AAAGGAGACAGCATTACGCCGTGCC 630 119 116 Antisense
CATTACGCCGTGCCGCAGATTATTT 376 215 127 Antisense
CGCCGTGCCGCAGATTATTTGAATG 495 257 132 Antisense
GATTATTTGAATGAGCTCACCCATA 346 429 144 Antisense
TGAGCTCACCCATAGTAAAACTGAA 537 565 155 Antisense
GAAGGCAGTTATCGAGTATATGGAG 177 333 182 Antisense
GAAGCATTCCATTAAGTGGCCAGAG 613 341 209 Antisense
TAAGTGGCCAGAGCACATCATCTGA 171 637 221 Antisense
Sequence Source Affymetrix Proprietary Database