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[173372_at]

Description AU113356_rc /REP_DB=TREMBL Accession /GB=AU113356 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706e2 : 3prime end, single read.
Cluster 6grp_total > 34      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 11
(0.9)
A 		16
(3)
A 		6.7
(-1)
A 		2
(-3)
A 		14
B 29.9
(1.1)
A 		26.6
(0.6)
A 		6.4
(-3)
A 		40.4
(3)
A 		34
C 44.2
(3)
P 		38.7
(1.7)
A 		19.4
(-3)
A 		29.7
(-0.5)
A 		25
avr 28.4
(3) 		27.1
(2.6) 		10.8
(-3) 		24
(1.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 27.6
(3)
A 		15.2
(0.2)
A 		24.9
(2.4)
P 		4.3
(-2.3)
A 		1.7
(-2.9)
A 		1.2
(-3)
A 		26
B 22.2
(3)
A 		19.3
(2.2)
A 		5.2
(-2)
A 		4.9
(-2.1)
A 		7.1
(-1.4)
A 		1.7
(-3)
A 		21
C 22.4
(1.4)
A 		29.9
(3)
A 		27.6
(2.5)
A 		2.5
(-2.7)
A 		0.9
(-3)
A 		15
(-0.1)
A 		29
avr 24.1
(3) 		21.5
(2.3) 		19.2
(1.6) 		3.9
(-2.8) 		3.2
(-3) 		6
(-2.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4
(3)
A 		3.5
(2.2)
A 		1.7
(-0.7)
A 		0.3
(-3)
A 		4
B 9.5
(3)
A 		6.6
(0.8)
A 		1.5
(-3)
A 		8.6
(2.3)
A 		8
C 14.6
(3)
P 		11.1
(0.8)
A 		6.8
(-1.9)
A 		5
(-3)
A 		10
avr 9.4
(3) 		7.1
(0.7) 		3.3
(-3) 		4.6
(-1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.1
(2.6)
A 		5.4
(3)
A 		5.4
(3)
P 		1.1
(-2.1)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		5
B 7.7
(3)
A 		6.4
(1.9)
A 		1.3
(-2.4)
A 		1.3
(-2.4)
A 		2.9
(-1.1)
A 		0.6
(-3)
A 		7
C 8.3
(2.5)
A 		9.1
(3)
A 		7
(1.6)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		5
(0.2)
A 		9
avr 7
(3) 		7
(3) 		4.6
(0.6) 		1
(-3) 		1.2
(-2.8) 		2
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28066
Sequence Type Exemplar sequence
Representative Public ID AU113356 NCBI
Target Description AU113356_rc /REP_DB=TREMBL Accession /GB=AU113356 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU113356
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU113356 AU113356_rc /REP_DB=TREMBL Accession /GB=AU113356 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706e2 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078174 1/11 Cross Hyb Matching Probes None
K09E9.2.1 1/11 Cross Hyb Matching Probes None
K09E9.2.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15075592-15075808(+) 61.78 61.78
Sequence
Target Sequence 
>C. ELEGANS:173372_AT
cctctcgtagagcaaaagggcaaaagcttgcttgatcttgactttcagnacgagtacaga
ccgcgaaagcgtggcctatcgatccttttaatcctgattgtttcaggtaagaggtgtcag
aaaagttacccctgggccttagcttgttctgtttagtatttatctggctttgtta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTCGTAGAGCAAAAGGGCAAAA 418 267 99 Antisense
AAGGGCAAAAGCTTGCTTGATCTTG 664 157 114 Antisense
AAGCTTGCTTGATCTTGACTTTCAG 422 149 122 Antisense
GAGTACAGACCGCGAAAGCGTGGCC 253 311 150 Antisense
ACAGACCGCGAAAGCGTGGCCTATC 27 109 154 Antisense
GCCTATCGATCCTTTTAATCCTGAT 576 281 172 Antisense
GATCCTTTTAATCCTGATTGTTTCA 31 417 179 Antisense
GATTGTTTCAGGTAAGAGGTGTCAG 325 435 194 Antisense
TGTCAGAAAAGTTACCCCTGGGCCT 546 555 213 Antisense
GGCCTTAGCTTGTTCTGTTTAGTAT 141 543 233 Antisense
GTTTAGTATTTATCTGGCTTTGTTA 402 449 249 Antisense
Sequence Source Affymetrix Proprietary Database