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[173370_at] ATP-dependent helicase (DEAD box)

Description AV184959_rc /REP_DB=TREMBL Accession /GB=AV184959 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 38      6grp_total > 79      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13610
1 2 3 4 range
A 11957.5
(1.2)
P 		6305.9
(-2.9)
P 		6206.9
(-3)
P 		14390.8
(3)
P 		8184
B 9327.5
(-1.3)
P 		7025.7
(-2.4)
P 		5724.5
(-3)
P 		18146.8
(3)
P 		12422
C 9787.8
(-1.6)
P 		7175.2
(-2.9)
P 		7009
(-3)
P 		19334.5
(3)
P 		12326
avr 10357.6
(-0.8) 		6835.6
(-2.7) 		6313.5
(-3) 		17290.7
(3) 		10977

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3290
1 2 3 4 5 6 range
A 5267
(-3)
P 		7166.1
(1.5)
P 		5922.5
(-1.4)
P 		6473.6
(-0.1)
P 		7077.7
(1.3)
P 		7776.6
(3)
P 		2510
B 6637.3
(-2)
P 		7308.7
(-0.3)
P 		6874.1
(-1.4)
P 		6838.7
(-1.5)
P 		6254.1
(-3)
P 		8556.9
(3)
P 		2303
C 7931.9
(3)
P 		7031.9
(-0.5)
P 		6401.8
(-3)
P 		6812
(-1.4)
P 		7908
(2.9)
P 		7249
(0.3)
P 		1530
avr 6612.1
(-2.1) 		7168.9
(0.2) 		6399.5
(-3) 		6708.1
(-1.7) 		7079.9
(-0.2) 		7860.8
(3) 		1461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3027
1 2 3 4 range
A 4353.7
(3)
P 		1368.8
(-3)
P 		1622.6
(-2.5)
P 		2106.5
(-1.5)
P 		2985
B 2974.5
(0.9)
P 		1735.2
(-2)
P 		1326.5
(-3)
P 		3867.1
(3)
P 		2541
C 3240.1
(2.9)
P 		2062.9
(-3)
P 		2442.9
(-1.1)
P 		3260.1
(3)
P 		1197
avr 3522.8
(3) 		1722.3
(-3) 		1797.3
(-2.8) 		3077.9
(1.5) 		1801

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2220
1 2 3 4 5 6 range
A 970.9
(-3)
P 		2548.6
(3)
P 		1289.8
(-1.8)
P 		1641.9
(-0.4)
P 		2135.7
(1.4)
P 		1893.4
(0.5)
P 		1578
B 2309.5
(-0.5)
P 		2432.8
(0)
P 		1669.2
(-3)
P 		1811.3
(-2.4)
P 		2540.9
(0.4)
P 		3190.8
(3)
P 		1522
C 2940
(3)
P 		2145.6
(-0)
P 		1629.4
(-2)
P 		1369.9
(-3)
P 		2558.9
(1.5)
P 		2426.6
(1)
P 		1570
avr 2073.5
(0.4) 		2375.7
(2.2) 		1529.5
(-3) 		1607.7
(-2.5) 		2411.8
(2.4) 		2503.6
(3) 		974
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28055
Sequence Type Exemplar sequence
Representative Public ID AV184959 NCBI
Target Description AV184959_rc /REP_DB=TREMBL Accession /GB=AV184959 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074077(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074077 NCBI Caenorhabditis elegans F58E10.3 (F58E10.3) mRNA, complete cds. 9/11 None
F58E10.3.1 ENSEMBL cdna:known chromosome:CEL140:V:14011363:14014529:-1 gene:F58E10.3 9/11 A 
F58E10.3.4 ENSEMBL cdna:known chromosome:CEL140:V:14011363:14014806:-1 gene:F58E10.3 9/11 None
F58E10.3.2 ENSEMBL cdna:known chromosome:CEL140:V:14011363:14014640:-1 gene:F58E10.3 9/11 A 
F58E10.3.3 ENSEMBL cdna:known chromosome:CEL140:V:14011363:14014455:-1 gene:F58E10.3 9/11 None
F58E10.3.6 ENSEMBL cdna:known chromosome:CEL140:V:14011374:14014453:-1 gene:F58E10.3 9/11 None
F58E10.3.5 ENSEMBL cdna:known chromosome:CEL140:V:14011374:14014509:-1 gene:F58E10.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001501 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14011422-14011723(-) 95.7 95.7
Public Domain and Genome References
Gene Title ATP-dependent helicase (DEAD box)
Ensembl F58E10.3
Entrez Gene 179897 Entrez gene
SwissProt Q9XUW5 EMBL-EBI
WormBase CE18785 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247378_AT ethylene-responsive DEAD box RNA helicase, putative (RH30) at
CANINE:1583256_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 cfa
CANINE:1588799_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 cfa
CANINE_2:CFA.1172.1.S1_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 cfa
DROSOPHILA_2:1629250_AT dm
DROSGENOME1:142516_AT dm
DROSOPHILA_2:1638060_AT dm
DROSGENOME1:151598_AT dm
CHICKEN:GGA.4548.1.S1_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 gga
PLASMODIUM_ANOPHELES:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-U133_PLUS_2:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-U133A:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-U133B:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-FOCUS:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-U133A_2:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
U133_X3P:200033_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HUGENEFL:X15729_S_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
U133_X3P:G13514826_3P_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HG-U95AV2:34647_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 hs
HU35KSUBC:RC_AA460957_AT RNA-binding protein 45 (RBP45), putative hs
U133_X3P:HS.279806.0.S1_3P_X_AT RNA-binding protein 45 (RBP45), putative hs
U133_X3P:HS.279806.0.S1_3P_AT RNA-binding protein 45 (RBP45), putative hs
HG-U133_PLUS_2:225886_AT RNA-binding protein 45 (RBP45), putative hs
HG-U133B:225886_AT RNA-binding protein 45 (RBP45), putative hs
MOE430A:1423645_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1423645_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1423645_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MG-U74AV2:93493_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1438371_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOE430A:1438371_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1438371_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOE430A:1433810_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1433810_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1433810_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MU11KSUBB:X65627_F_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MU11KSUBB:MSA.2334.0_F_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOE430A:1419653_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1419653_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1419653_A_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOE430A:1433809_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1433809_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1433809_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOE430A:1454793_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430A_2:1454793_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MOUSE430_2:1454793_X_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 mm
MU19KSUBA:TC17122_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
MU19KSUBA:TC17785_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
MU19KSUBA:TC23246_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
MU19KSUBA:TC23246_G_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
MU19KSUBB:TC31421_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
MU19KSUBC:TC38979_AT DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA clone IMAGE:3598655) mm
RG-U34B:RC_AA851926_AT ddx5 gene rn
RAE230A:1371837_AT ddx5 gene rn
RAT230_2:1371837_AT ddx5 gene rn
RAE230A:1372484_AT Similar to RIKEN cDNA 4732496G21 gene (predicted) rn
RAT230_2:1372484_AT Similar to RIKEN cDNA 4732496G21 gene (predicted) rn
RG-U34B:RC_AA965219_AT Similar to RIKEN cDNA 4732496G21 gene (predicted) rn
RG-U34C:RC_AI229450_AT Similar to RIKEN cDNA 4732496G21 gene (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04518 Hypothetical protein F58E10.3 [Caenorhabditis elegans] ref|NP_506478.1| F58E10.3 [Caenorhabditis elegans] 0.0
blast CAE66170 Hypothetical protein CBG11408 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.5E-34
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.3E-78
Sequence
Target Sequence 
>C. ELEGANS:173370_AT
ggtggccgatggtagacgatctacatatcttctcactcacttccgacatttaaacgataa
ttcagatctcgttcgttcggttttaatggaactctgnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgttgngcccatattttanntntg
ttttaaccagtaactgtcatctccctccgcactcttaacaatatccatctagttttatca
ttgcgttttgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCCGATGGTAGACGATCTACA 414 497 34 Antisense
AGACGATCTACATATCTTCTCACTC 504 71 47 Antisense
TTCTCACTCACTTCCGACATTTAAA 593 691 63 Antisense
GATAATTCAGATCTCGTTCGTTCGG 585 419 89 Antisense
TTCAGATCTCGTTCGTTCGGTTTTA 685 683 94 Antisense
GATCTCGTTCGTTCGGTTTTAATGG 668 413 98 Antisense
TTCGTTCGGTTTTAATGGAACTCTG 58 643 105 Antisense
TTAACCAGTAACTGTCATCTCCCTC 94 683 216 Antisense
TCCGCACTCTTAACAATATCCATCT 93 597 239 Antisense
ATCCATCTAGTTTTATCATTGCGTT 470 39 256 Antisense
ATCTAGTTTTATCATTGCGTTTTGT 518 31 260 Antisense
Sequence Source Affymetrix Proprietary Database