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[173369_s_at] Ribosomal protein S21

Description AU116136_rc /REP_DB=TREMBL Accession /GB=AU116136 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19424
1 2 3 4 range
A 24918.5
(-3)
P 		34100.9
(-0.1)
P 		31125.4
(-1.1)
P 		44097.9
(3)
P 		19179
B 26756.4
(-3)
P 		28087
(-1.8)
P 		31019.1
(0.8)
P 		33555.1
(3)
P 		6799
C 24673.7
(-3)
P 		26541.8
(-2.2)
P 		25033.7
(-2.8)
P 		37980.8
(3)
P 		13307
avr 25449.5
(-3) 		29576.6
(-1.1) 		29059.4
(-1.3) 		38544.6
(3) 		13095

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8927
1 2 3 4 5 6 range
A 25243.5
(1.9)
P 		22887.3
(0.1)
P 		26645.3
(3)
P 		24406.9
(1.3)
P 		18855.5
(-3)
P 		22505.9
(-0.2)
P 		7790
B 21897.8
(1.1)
P 		19884.9
(-0.9)
P 		23909.5
(3)
P 		21996.4
(1.1)
P 		19045.3
(-1.7)
P 		17718.3
(-3)
P 		6191
C 21595.3
(-0.2)
P 		20678.5
(-1.1)
P 		24978.9
(3)
P 		23024.3
(1.1)
P 		22170.9
(0.3)
P 		18686.5
(-3)
P 		6292
avr 22912.2
(0.5) 		21150.2
(-1.4) 		25177.9
(3) 		23142.5
(0.8) 		20023.9
(-2.6) 		19636.9
(-3) 		5541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2669
1 2 3 4 range
A 9072.8
(3)
P 		7402.4
(-0.8)
P 		8136.8
(0.9)
P 		6455.1
(-3)
P 		2618
B 8532.4
(3)
P 		6936.9
(-3)
P 		7187.8
(-2.1)
P 		7150.6
(-2.2)
P 		1596
C 8167.7
(1.6)
P 		7630.9
(0.2)
P 		8725
(3)
P 		6404.2
(-3)
P 		2321
avr 8591
(3) 		7323.4
(-1) 		8016.5
(1.2) 		6670
(-3) 		1921

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3510
1 2 3 4 5 6 range
A 4653.4
(-3)
P 		8139.8
(3)
P 		5802.8
(-1)
P 		6190.2
(-0.4)
P 		5689.8
(-1.2)
P 		5479.5
(-1.6)
P 		3486
B 7619.4
(2.6)
P 		6618.8
(-0.5)
P 		5805.9
(-3)
P 		5826.1
(-2.9)
P 		7737.9
(3)
P 		6607.1
(-0.5)
P 		1932
C 8004.5
(3)
P 		6309.6
(-0)
P 		6357.6
(0.1)
P 		4630.2
(-3)
P 		7174.2
(1.5)
P 		6255.5
(-0.1)
P 		3374
avr 6759.1
(1.9) 		7022.7
(3) 		5988.8
(-1.2) 		5548.8
(-3) 		6867.3
(2.4) 		6114
(-0.7) 		1474
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173369_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28074
Sequence Type Exemplar sequence
Representative Public ID AU116136 NCBI
Target Description AU116136_rc /REP_DB=TREMBL Accession /GB=AU116136 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066178 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-21) (rps-21) mRNA, complete cds. 11/11 A 
SNAP00000030596 ENSEMBL cdna:SNAP chromosome:CEL140:III:7189135:7189549:-1 11/11 None
GENEFINDER00000030605 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7189135:7189848:-1 11/11 None
F37C12.11.1 ENSEMBL cdna:known chromosome:CEL140:III:7189058:7189555:-1 gene:F37C12.11 11/11 A 
F37C12.11.2 ENSEMBL cdna:known chromosome:CEL140:III:7189085:7189562:-1 gene:F37C12.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7189101-7189560(-) 81.75 81.75
Public Domain and Genome References
Gene Title Ribosomal protein S21
Gene Symbol rps-21
Ensembl F37C12.11
Entrez Gene 176011 Entrez gene
SwissProt P49197 EMBL-EBI
WormBase CE30779 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246747_AT 40S ribosomal protein S21 (RPS21C) at
CANINE:1604398_AT similar to ribosomal protein S21 cfa
CANINE_2:CFA.802.2.S1_S_AT similar to ribosomal protein S21 cfa
DROSOPHILA_2:1623644_S_AT overgrown hematopoietic organs at 23B dm
DROSGENOME1:143812_AT overgrown hematopoietic organs at 23B dm
CHICKEN:GGA.5481.1.S1_A_AT ribosomal protein S21 gga
HG-U95AV2:32744_AT ribosomal protein S21 hs
HG-U133A:200834_S_AT ribosomal protein S21 hs
HG-U133_PLUS_2:200834_S_AT ribosomal protein S21 hs
HG-U133A_2:200834_S_AT ribosomal protein S21 hs
HG-FOCUS:200834_S_AT ribosomal protein S21 hs
HUGENEFL:L04483_S_AT ribosomal protein S21 hs
U133_X3P:G4506698_3P_A_AT ribosomal protein S21 hs
HG-U133A_2:214097_AT ribosomal protein S21 hs
HG-U133_PLUS_2:214097_AT ribosomal protein S21 hs
HG-U133A:214097_AT ribosomal protein S21 hs
HG-U95C:59703_S_AT ribosomal protein S21 hs
MOE430A:1434358_X_AT ribosomal protein S21 mm
MOUSE430A_2:1434358_X_AT ribosomal protein S21 mm
MOUSE430_2:1434358_X_AT ribosomal protein S21 mm
MOE430A:1433721_X_AT ribosomal protein S21 mm
MOUSE430A_2:1433721_X_AT ribosomal protein S21 mm
MOUSE430_2:1433721_X_AT ribosomal protein S21 mm
MOE430A:1439415_X_AT ribosomal protein S21 mm
MOUSE430A_2:1439415_X_AT ribosomal protein S21 mm
MOUSE430_2:1439415_X_AT ribosomal protein S21 mm
MOE430A:1433549_X_AT ribosomal protein S21 mm
MOUSE430A_2:1433549_X_AT ribosomal protein S21 mm
MOUSE430_2:1433549_X_AT ribosomal protein S21 mm
MOE430B:1430288_X_AT ribosomal protein S21 mm
MOUSE430_2:1430288_X_AT ribosomal protein S21 mm
MU19KSUBA:TC18869_F_AT Ribosomal protein S21 (Rps21), mRNA mm
MU19KSUBC:TC36292_AT Ribosomal protein S21 (Rps21), mRNA mm
RG-U34A:RC_AI178207_AT ribosomal protein S21 rn
RG-U34B:RC_AA955374_S_AT ribosomal protein S21 rn
RAE230A:1398852_AT ribosomal protein S21 rn
RAT230_2:1398852_AT ribosomal protein S21 rn
YEAST_2:1770569_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T28840 hypothetical protein F37C12.11 - Caenorhabditis elegans 9.0E-71
blast AAC48297 Ribosomal protein, small subunit protein 21 [Caenorhabditis elegans] ref|NP_498579.2| Ribosomal Protein, Small subunit family member (rps-21) [Caenorhabditis elegans] sp|P49197|RS21_CAEEL 40S ribosomal protein S21 1.0E-44
blast T28840 hypothetical protein F37C12.11 - Caenorhabditis elegans 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001931 EMBL-EBI Ribosomal protein S21e 2.2E-65
Pfam IPR001931 EMBL-EBI Ribosomal protein S21e 2.2E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030605 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:173369_S_AT
acgacgccggacaaaccgtcgagctttacgttccacgcaagtgctcttcgtccaaccgca
tcatcggaccaaaggaccacgcttccgtccaaatcgatttcgtcgatgtcgacccagaga
ctggccgcatgatcccaggaaagtctacccgctacgccatctgtggagctatccgccgca
tgggagaatccgacgacgctatcttgagacttgcccagaaggacggactcgtgccaagag
atgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACGCCGGACAAACCGTCGAGCT 307 75 89 Antisense
GTCCAACCGCATCATCGGACCAAAG 309 475 138 Antisense
ATCATCGGACCAAAGGACCACGCTT 697 29 148 Antisense
ACGCTTCCGTCCAAATCGATTTCGT 16 93 167 Antisense
TCGATTTCGTCGATGTCGACCCAGA 608 603 182 Antisense
TCGACCCAGAGACTGGCCGCATGAT 72 601 197 Antisense
ATGATCCCAGGAAAGTCTACCCGCT 235 45 217 Antisense
TATCCGCCGCATGGGAGAATCCGAC 164 659 258 Antisense
GAATCCGACGACGCTATCTTGAGAC 261 329 274 Antisense
GAGACTTGCCCAGAAGGACGGACTC 547 393 294 Antisense
GGACGGACTCGTGCCAAGAGATGAT 195 523 309 Antisense
Sequence Source Affymetrix Proprietary Database