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[173368_at]

Description AV180421_rc /REP_DB=TREMBL Accession /GB=AV180421 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk607b8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 63      6grp_total > 34      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 124.1
(2.1)
P 		130.8
(2.9)
P 		132.2
(3)
A 		76.1
(-3)
A 		56
B 126.7
(-1.1)
P 		129.6
(-0.9)
P 		189.9
(3)
P 		97
(-3)
A 		93
C 144
(-1.4)
P 		156.4
(3)
P 		140.7
(-2.6)
P 		139.5
(-3)
P 		17
avr 131.6
(0.3) 		138.9
(1.2) 		154.3
(3) 		104.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 155.4
(3)
P 		140.7
(1.2)
P 		155.4
(3)
P 		130.3
(-0)
A 		107.2
(-2.8)
A 		105.7
(-3)
P 		50
B 172.9
(3)
P 		139
(-0.1)
P 		145.8
(0.5)
P 		116.6
(-2.2)
P 		119.4
(-2)
P 		108.1
(-3)
P 		65
C 134.6
(0.4)
P 		167.9
(3)
P 		148.2
(1.5)
A 		89.6
(-3)
A 		93.5
(-2.7)
P 		119.2
(-0.7)
P 		78
avr 154.3
(3) 		149.2
(2.4) 		149.8
(2.4) 		112.2
(-2.3) 		106.7
(-3) 		111
(-2.5) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.2
(3)
P 		28.4
(0)
P 		34.5
(1.1)
A 		11.1
(-3)
A 		34
B 40.4
(2.1)
P 		32
(-0.1)
P 		44
(3)
P 		20.7
(-3)
A 		23
C 47.7
(2.7)
P 		45
(2.1)
P 		49
(3)
P 		23.5
(-3)
P 		26
avr 44.4
(3) 		35.1
(0.9) 		42.5
(2.6) 		18.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 28.6
(-2.3)
P 		50
(3)
P 		33.8
(-1)
P 		33
(-1.2)
A 		32.3
(-1.4)
A 		25.7
(-3)
P 		24
B 60.1
(3)
P 		46.3
(0.2)
P 		35.4
(-2.1)
P 		30.9
(-3)
P 		48.5
(0.6)
P 		40.3
(-1.1)
P 		29
C 49.9
(2.8)
P 		51.2
(3)
P 		37.7
(0.6)
A 		18
(-3)
A 		30.3
(-0.8)
P 		39.9
(1)
P 		33
avr 46.2
(2.2) 		49.2
(3) 		35.6
(-0.7) 		27.3
(-3) 		37
(-0.3) 		35.3
(-0.8) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28014
Sequence Type Exemplar sequence
Representative Public ID AV180421 NCBI
Target Description AV180421_rc /REP_DB=TREMBL Accession /GB=AV180421 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk607b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065020
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y67D2.7 ENSEMBL cdna:known chromosome:CEL140:III:1555385:1562224:-1 gene:Y67D2.7 A 
NM_065020 NCBI Caenorhabditis elegans Y67D2.7 (Y67D2.7) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1555461-1555783(-) 62.85 83.59
Public Domain and Genome References
Gene Title
Ensembl Y67D2.7
Entrez Gene 175309 Entrez gene
SwissProt Q9BKQ7 EMBL-EBI
WormBase CE39062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497421 Y67D2.7 [Caenorhabditis elegans] 0.0
blast AAK27884 Hypothetical protein Y67D2.7 [Caenorhabditis elegans] 1.0E-132
blast CAE69186 Hypothetical protein CBG15220 [Caenorhabditis briggsae] 7.0E-63
Sequence
Target Sequence 
>C. ELEGANS:173368_AT
aatgtcggattcgtattctccacgtcatcagctttcgaatgacccactacatgcctgggt
tccggcgattttgaattttcgccgttttgacacagctgaaatcggtgctacagtaacccg
cgtggcgagacccgaaattttcaaagtcgacggaacccgggcatgttnnnnntcatttga
aagctgatgactcggagaattcgaattcggcgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTCGGATTCGTATTCTCCACGT 52 163 45 Antisense
CACGTCATCAGCTTTCGAATGACCC 557 199 65 Antisense
TCAGCTTTCGAATGACCCACTACAT 502 621 72 Antisense
ATGACCCACTACATGCCTGGGTTCC 658 21 83 Antisense
CATGCCTGGGTTCCGGCGATTTTGA 477 209 94 Antisense
GCCTGGGTTCCGGCGATTTTGAATT 482 267 97 Antisense
GAATTTTCGCCGTTTTGACACAGCT 645 323 117 Antisense
GCCGTTTTGACACAGCTGAAATCGG 31 283 125 Antisense
CAAAGTCGACGGAACCCGGGCATGT 492 189 186 Antisense
ATTTGAAAGCTGATGACTCGGAGAA 492 15 219 Antisense
GACTCGGAGAATTCGAATTCGGCGT 533 373 233 Antisense
Sequence Source Affymetrix Proprietary Database