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[173367_s_at] 40S ribosomal protein S10

Description AV200343_rc /REP_DB=TREMBL Accession /GB=AV200343 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 43      4grp_total > 16      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18055
1 2 3 4 range
A 23870
(-3)
P 		32784.6
(0.3)
P 		30275.2
(-0.6)
P 		40183.6
(3)
P 		16314
B 25783.5
(-3)
P 		26220.6
(-2.7)
P 		31492.9
(0.6)
P 		35411.8
(3)
P 		9628
C 22128.8
(-3)
P 		25648.5
(-1.8)
P 		24522.4
(-2.2)
P 		39992.3
(3)
P 		17864
avr 23927.4
(-3) 		28217.9
(-1.2) 		28763.5
(-1) 		38529.2
(3) 		14602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7425
1 2 3 4 5 6 range
A 19528.5
(-0.5)
P 		20646.2
(0.4)
P 		23835.5
(3)
P 		21808.8
(1.4)
P 		16410.2
(-3)
P 		20107.6
(-0)
P 		7425
B 18645.7
(-0.9)
P 		20547.4
(0.9)
P 		22741.1
(3)
P 		17934.1
(-1.6)
P 		16443.4
(-3)
P 		17241.5
(-2.2)
P 		6298
C 21392.2
(2.2)
P 		20362
(0.7)
P 		21847.4
(2.8)
P 		17748.2
(-3)
P 		21963.4
(3)
P 		17756.5
(-3)
P 		4215
avr 19855.5
(-0.9) 		20518.5
(-0) 		22808
(3) 		19163.7
(-1.8) 		18272.3
(-3) 		18368.5
(-2.9) 		4536
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2809
1 2 3 4 range
A 8691.1
(3)
P 		7116.7
(-0.4)
P 		7914.5
(1.3)
P 		5882.1
(-3)
P 		2809
B 8222.2
(3)
P 		6475.9
(-3)
P 		7297.6
(-0.2)
P 		7546.3
(0.7)
P 		1746
C 7325.3
(-1.1)
P 		7374.1
(-0.9)
P 		8546.8
(3)
P 		6743.3
(-3)
P 		1804
avr 8079.5
(3) 		6988.9
(-1.8) 		7919.6
(2.3) 		6723.9
(-3) 		1356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4360
1 2 3 4 5 6 range
A 3599.9
(-3)
P 		7342.8
(3)
P 		5190.9
(-0.4)
P 		5531.2
(0.1)
P 		4951.9
(-0.8)
P 		4895.6
(-0.9)
P 		3743
B 6487.8
(2)
P 		6839.4
(3)
P 		5522.2
(-0.8)
P 		4750.1
(-3)
P 		6680.7
(2.5)
P 		6429.3
(1.8)
P 		2089
C 7929.1
(3)
P 		6213.1
(0.6)
P 		5560.5
(-0.3)
P 		3569.2
(-3)
P 		7107
(1.9)
P 		5944.1
(0.3)
P 		4360
avr 6005.6
(0.8) 		6798.4
(3) 		5424.5
(-0.8) 		4616.8
(-3) 		6246.5
(1.5) 		5756.3
(0.1) 		2182
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173367_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27608
Sequence Type Exemplar sequence
Representative Public ID AV200343 NCBI
Target Description AV200343_rc /REP_DB=TREMBL Accession /GB=AV200343 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058997 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-10) (rps-10) mRNA, complete cds. 11/11 A 
SNAP00000011281 ENSEMBL cdna:SNAP chromosome:CEL140:I:4583943:4584492:-1 11/11 None
GENEFINDER00000011313 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4583943:4584492:-1 11/11 None
D1007.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4583873:4584506:-1 gene:D1007.6 11/11 None
D1007.6.3 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584512:-1 gene:D1007.6 11/11 None
D1007.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4583874:4584513:-1 gene:D1007.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4583972-4584191(-) 71.25 71.25
Public Domain and Genome References
Gene Title 40S ribosomal protein S10
Gene Symbol rps-10
Ensembl D1007.6
Entrez Gene 172061 Entrez gene
SwissProt O01869 EMBL-EBI
WormBase CE09041 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248331_AT 40S ribosomal protein S10 (RPS10C) at
CANINE:1583130_AT similar to 40S ribosomal protein S10 cfa
CANINE_2:CFAAFFX.2709.1.S1_S_AT similar to 40S ribosomal protein S10 cfa
DROSOPHILA_2:1622893_AT Ribosomal protein S10b dm
DROSGENOME1:151211_AT Ribosomal protein S10b dm
DROSOPHILA_2:1635528_S_AT Ribosomal protein S10b dm
DROSGENOME1:141358_AT Ribosomal protein S10b dm
MOE430A:1434854_A_AT ribosomal protein S10 mm
MOUSE430A_2:1434854_A_AT ribosomal protein S10 mm
MOUSE430_2:1434854_A_AT ribosomal protein S10 mm
MG-U74AV2:99093_AT ribosomal protein S10 mm
MOUSE430_2:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1438723_A_AT ribosomal protein S10 mm
MOE430A:1438723_A_AT ribosomal protein S10 mm
MOUSE430A_2:1456497_X_AT ribosomal protein S10 mm
MOE430A:1456497_X_AT ribosomal protein S10 mm
MOUSE430_2:1456497_X_AT ribosomal protein S10 mm
MU11KSUBB:W13807_AT ribosomal protein S10 mm
MOE430A:1436384_AT ribosomal protein S10 mm
MOUSE430A_2:1436384_AT ribosomal protein S10 mm
MOUSE430_2:1436384_AT ribosomal protein S10 mm
MOE430A:1416719_A_AT ribosomal protein S10 mm
MOUSE430A_2:1416719_A_AT ribosomal protein S10 mm
MOUSE430_2:1416719_A_AT ribosomal protein S10 mm
MG-U74BV2:109296_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_I_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
MU19KSUBB:TC26682_S_AT Ribosomal protein S10, mRNA (cDNA clone MGC:30579 IMAGE:3497741) mm
RG-U34A:X13549_S_AT ribosomal protein S10 rn
RAE230A:1386868_AT ribosomal protein S10 rn
RAT230_2:1386868_AT ribosomal protein S10 rn
YEAST_2:1772550_X_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
YEAST_2:1776853_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10 Sc
Protein Similarities
Method ID Description E-Value
blast AAK18912 Ribosomal protein, small subunit protein 10 [Caenorhabditis elegans] ref|NP_491398.1| Ribosomal Protein, Small subunit family member (rps-10) [Caenorhabditis elegans] 3.0E-83
blast CAE74520 Hypothetical protein CBG22274 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR005326 EMBL-EBI Plectin/S10, N-terminal 6.5E-69
Sequence
Target Sequence 
>C. ELEGANS:173367_S_AT
tcaagaccaagccaagagagatccgtgtcccacacgaggatagagccccacgcgccgctc
aaggcgagaagggagaccgtgaagcctacagaaccgagaaggtcaccgaggctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGACCAAGCCAAGAGAGATCCG 608 631 107 Antisense
CCAAGCCAAGAGAGATCCGTGTCCC 90 277 113 Antisense
AGATCCGTGTCCCACACGAGGATAG 273 65 125 Antisense
TGTCCCACACGAGGATAGAGCCCCA 520 557 132 Antisense
CCACGCGCCGCTCAAGGCGAGAAGG 292 273 154 Antisense
GCCGCTCAAGGCGAGAAGGGAGACC 654 283 160 Antisense
GAAGGGAGACCGTGAAGCCTACAGA 457 331 174 Antisense
GACCGTGAAGCCTACAGAACCGAGA 565 381 181 Antisense
CCGTGAAGCCTACAGAACCGAGAAG 146 265 183 Antisense
GAACCGAGAAGGTCACCGAGGCTGG 85 347 197 Antisense
AACCGAGAAGGTCACCGAGGCTGGA 139 145 198 Antisense
Sequence Source Affymetrix Proprietary Database