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[173365_at]

Description AV198986_rc /REP_DB=TREMBL Accession /GB=AV198986 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 05      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 375.7
(-1.7)
P 		321.7
(-3)
P 		355.1
(-2.2)
P 		569.7
(3)
P 		248
B 453.3
(-0.6)
P 		321.4
(-3)
P 		330.8
(-2.8)
P 		651.2
(3)
P 		330
C 453.6
(2.2)
P 		296.8
(-3)
P 		367.8
(-0.6)
P 		477.1
(3)
P 		180
avr 427.5
(-0.3) 		313.3
(-3) 		351.2
(-2.1) 		566
(3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 387.7
(0.4)
P 		288.2
(-3)
P 		379.5
(0.1)
P 		463.6
(3)
P 		395.4
(0.7)
P 		437.1
(2.1)
P 		175
B 347.3
(-2.9)
P 		340.4
(-3)
P 		423.8
(-1.4)
P 		487.2
(-0.2)
P 		439.8
(-1.1)
P 		656.4
(3)
P 		316
C 290.4
(-3)
P 		442.8
(-0.6)
P 		382
(-1.6)
P 		376
(-1.7)
P 		311.3
(-2.7)
P 		672
(3)
P 		382
avr 341.8
(-3) 		357.1
(-2.6) 		395.1
(-1.7) 		442.3
(-0.6) 		382.2
(-2) 		588.5
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 136.8
(3)
P 		69.8
(-3)
P 		92.8
(-0.9)
P 		83.4
(-1.8)
P 		67
B 144.6
(3)
P 		79.4
(-2.8)
P 		76.7
(-3)
P 		138.8
(2.5)
P 		68
C 150.2
(3)
P 		85.3
(-2.6)
P 		128.2
(1.1)
P 		80.5
(-3)
P 		70
avr 143.9
(3) 		78.2
(-3) 		99.2
(-1.1) 		100.9
(-0.9) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 71.5
(-3)
P 		102.5
(0.9)
P 		82.7
(-1.6)
P 		117.6
(2.8)
P 		119.3
(3)
P 		106.4
(1.4)
P 		48
B 120.8
(-2.2)
P 		113.3
(-2.6)
P 		102.9
(-3)
P 		129
(-1.9)
P 		178.7
(0.2)
P 		244.8
(3)
P 		142
C 107.6
(-1.7)
P 		135.1
(-0.6)
P 		97.2
(-2.1)
P 		75.6
(-3)
P 		100.7
(-2)
P 		225
(3)
P 		149
avr 100
(-2.7) 		117
(-1.6) 		94.3
(-3) 		107.4
(-2.2) 		132.9
(-0.6) 		192.1
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27993
Sequence Type Exemplar sequence
Representative Public ID AV198986 NCBI
Target Description AV198986_rc /REP_DB=TREMBL Accession /GB=AV198986 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070157 NCBI Caenorhabditis elegans Y67H2A.7 (Y67H2A.7) mRNA, complete cds. 11/11 None
SNAP00000010786 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13303721:13310675:1 11/11 None
GENEFINDER00000010792 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13303721:13310675:1 11/11 None
Y67H2A.7 ENSEMBL cdna:known chromosome:CEL140:IV:13303715:13310771:1 gene:Y67H2A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13310425-13310728(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67H2A.7
Entrez Gene 178290 Entrez gene
SwissProt Q95PY9 EMBL-EBI
WormBase CE32274 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248409_AT peptidase M3 family protein / thimet oligopeptidase family protein at
CANINE:1597173_AT similar to mitochondrial intermediate peptidase cfa
CANINE:1589402_AT similar to mitochondrial intermediate peptidase cfa
CANINE:1585175_AT similar to mitochondrial intermediate peptidase cfa
CANINE_2:CFA.12350.1.A1_AT similar to mitochondrial intermediate peptidase cfa
CANINE_2:CFA.7372.1.S1_AT similar to mitochondrial intermediate peptidase cfa
CANINE_2:CFA.8202.1.A1_AT similar to mitochondrial intermediate peptidase cfa
CANINE_2:CFA.8202.1.A1_S_AT similar to mitochondrial intermediate peptidase cfa
CANINE_2:CFAAFFX.11582.1.S1_S_AT similar to mitochondrial intermediate peptidase cfa
DROSOPHILA_2:1632180_AT dm
DROSGENOME1:141715_AT dm
CHICKEN:GGA.7962.1.S1_AT similar to Mitochondrial intermediate peptidase gga
CHICKEN:GGAAFFX.10975.1.S1_AT similar to Mitochondrial intermediate peptidase gga
CHICKEN:GGAAFFX.10975.2.S1_AT similar to Mitochondrial intermediate peptidase gga
CHICKEN:GGAAFFX.10975.2.S1_S_AT similar to Mitochondrial intermediate peptidase gga
HG-U133_PLUS_2:204305_AT mitochondrial intermediate peptidase hs
HG-U133A_2:204305_AT mitochondrial intermediate peptidase hs
HG-U133A:204305_AT mitochondrial intermediate peptidase hs
HUGENEFL:U80034_AT mitochondrial intermediate peptidase hs
U133_X3P:G5174566_3P_X_AT mitochondrial intermediate peptidase hs
U133_X3P:G5174566_3P_S_AT mitochondrial intermediate peptidase hs
U133_X3P:G5174566_3P_AT mitochondrial intermediate peptidase hs
HG-U133A_2:36830_AT mitochondrial intermediate peptidase hs
HG-FOCUS:36830_AT mitochondrial intermediate peptidase hs
HG-U133_PLUS_2:36830_AT mitochondrial intermediate peptidase hs
HG-U133A:36830_AT mitochondrial intermediate peptidase hs
HG-U95AV2:36830_AT mitochondrial intermediate peptidase hs
HU35KSUBB:RC_R20803_AT Mitochondrial intermediate peptidase hs
MG-U74BV2:116661_AT mitochondrial intermediate peptidase mm
MG-U74CV2:134693_AT mitochondrial intermediate peptidase mm
MG-U74CV2:169804_R_AT mitochondrial intermediate peptidase mm
MOE430B:1428290_AT mitochondrial intermediate peptidase mm
MOUSE430_2:1428290_AT mitochondrial intermediate peptidase mm
MOE430B:1459294_AT mitochondrial intermediate peptidase mm
MOUSE430_2:1459294_AT mitochondrial intermediate peptidase mm
MG-U74CV2:170482_AT Mitochondrial intermediate peptidase, mRNA (cDNA clone IMAGE:5065918) mm
MU19KSUBA:TC20455_AT Mitochondrial intermediate peptidase, mRNA (cDNA clone IMAGE:5065918) mm
RN-U34:M96633_AT mitochondrial intermediate peptidase rn
RG-U34A:M96633_AT mitochondrial intermediate peptidase rn
RAE230A:1369023_AT mitochondrial intermediate peptidase rn
RAT230_2:1369023_AT mitochondrial intermediate peptidase rn
YEAST_2:1776715_AT Mitochondrial intermediate peptidase, cleaves N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC44308 Hypothetical protein Y67H2A.7 [Caenorhabditis elegans] ref|NP_502558.2| Y67H2A.7 [Caenorhabditis elegans] 0.0
blast CAE58624 Hypothetical protein CBG01792 [Caenorhabditis briggsae] 0.0
blast XP_396237 PREDICTED: similar to ENSANGP00000020780 [Apis mellifera] 6.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 1.1E-61
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 6.4E-4
Pfam IPR001567 EMBL-EBI Peptidase M3A and M3B, thimet/oligopeptidase F 6.3E-54
Sequence
Target Sequence 
>C. ELEGANS:173365_AT
aagtactactcatatcttgtggcccgtgcttctgcttgtctcatctggcaacagagattc
ctgaatgacccattctcacggaaatggggagattgttgggccgaagttcaatcacatgga
ggtggacatcatcctgctgttctattggagaagattcttggcttcaggccaacggaaaat
gatttaacgcaggcactctcgaaggaatctcaacatttggcgaatctcgatgcggttact
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTACTACTCATATCTTGTGGCCC 510 157 23 Antisense
CTGCTTGTCTCATCTGGCAACAGAG 676 237 54 Antisense
GATTCCTGAATGACCCATTCTCACG 442 433 78 Antisense
GGGGAGATTGTTGGGCCGAAGTTCA 475 485 108 Antisense
GGGCCGAAGTTCAATCACATGGAGG 196 491 120 Antisense
GACATCATCCTGCTGTTCTATTGGA 242 371 147 Antisense
GATTCTTGGCTTCAGGCCAACGGAA 585 427 175 Antisense
ATGATTTAACGCAGGCACTCTCGAA 240 47 201 Antisense
GCAGGCACTCTCGAAGGAATCTCAA 28 311 211 Antisense
GGAATCTCAACATTTGGCGAATCTC 412 533 226 Antisense
TGGCGAATCTCGATGCGGTTACTGT 490 543 240 Antisense
Sequence Source Affymetrix Proprietary Database