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[173364_s_at]

Description AV182582_rc /REP_DB=TREMBL Accession /GB=AV182582 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 50      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 598.3
(-0.6)
P 		758.4
(3)
P 		605.9
(-0.4)
P 		489.8
(-3)
P 		269
B 537.7
(-3)
P 		574.3
(-2.3)
P 		841.7
(3)
P 		558.8
(-2.6)
P 		304
C 548.5
(-1.3)
P 		695.6
(3)
P 		510.8
(-2.4)
P 		490.3
(-3)
P 		205
avr 561.5
(-1.2) 		676.1
(3) 		652.8
(2.1) 		513
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 579.5
(2.8)
P 		538.1
(1.8)
P 		354.8
(-3)
P 		414
(-1.5)
P 		448.3
(-0.6)
P 		585.5
(3)
P 		231
B 565.3
(-1)
P 		405
(-2.7)
P 		454.5
(-2.2)
P 		385.3
(-2.9)
P 		380.2
(-3)
P 		928.8
(3)
P 		549
C 448.3
(-1.5)
P 		476.2
(-1.1)
P 		474.1
(-1.1)
P 		355.8
(-3)
P 		392.2
(-2.4)
P 		735.3
(3)
P 		380
avr 531
(-0.6) 		473.1
(-1.6) 		427.8
(-2.3) 		385
(-3) 		406.9
(-2.6) 		749.9
(3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 217.8
(3)
P 		164.6
(0.8)
P 		158.4
(0.6)
P 		71.7
(-3)
P 		146
B 171.5
(1.1)
P 		141.8
(-1.2)
P 		195
(3)
P 		119.1
(-3)
P 		76
C 181.6
(2.1)
P 		200
(3)
P 		178
(1.9)
P 		82.7
(-3)
P 		117
avr 190.3
(3) 		168.8
(1.7) 		177.1
(2.2) 		91.2
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 106.8
(-1.4)
P 		191.4
(3)
P 		77.3
(-3)
P 		105
(-1.5)
P 		135.3
(0)
P 		142.6
(0.4)
P 		114
B 196.7
(-0.7)
P 		134.8
(-2.2)
P 		110.4
(-2.8)
P 		102
(-3)
P 		154.5
(-1.7)
P 		346.4
(3)
P 		244
C 166.2
(0.3)
P 		145.3
(-0.5)
P 		120.7
(-1.3)
P 		71.5
(-3)
P 		126.9
(-1.1)
P 		246.1
(3)
P 		175
avr 156.6
(-0.5) 		157.2
(-0.5) 		102.8
(-2.6) 		92.8
(-3) 		138.9
(-1.2) 		245
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173364_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27650
Sequence Type Exemplar sequence
Representative Public ID AV182582 NCBI
Target Description AV182582_rc /REP_DB=TREMBL Accession /GB=AV182582 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058901(11), NM_182055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058901 NCBI Caenorhabditis elegans E01A2.2a (E01A2.2) mRNA, complete cds. 11/11 A 
NM_182055 NCBI Caenorhabditis elegans E01A2.2b (E01A2.2) mRNA, complete cds. 11/11 A 
SNAP00000008534 ENSEMBL cdna:SNAP chromosome:CEL140:I:4132502:4135063:1 11/11 None
GENEFINDER00000008592 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4132502:4135063:1 11/11 None
E01A2.2a ENSEMBL cdna:known chromosome:CEL140:I:4132501:4135240:1 gene:E01A2.2 11/11 None
E01A2.2b ENSEMBL cdna:known chromosome:CEL140:I:4133159:4135063:1 gene:E01A2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4134830-4135086(+) 64.44 64.44
Public Domain and Genome References
Ensembl E01A2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85459 Hypothetical protein E01A2.2a [Caenorhabditis elegans] ref|NP_491302.1| E01A2.2a [Caenorhabditis elegans] sp|Q966L5|ARS2_CAEEL Arsenite-resistance protein 2 homolog 0.0
blast CAE66718 Hypothetical protein CBG12064 [Caenorhabditis briggsae] 0.0
blast AAO38662 Hypothetical protein E01A2.2b [Caenorhabditis elegans] ref|NP_871855.1| E01A2.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007042 EMBL-EBI Arsenite-resistance protein 2 1.8E-57
Pfam IPR007042 EMBL-EBI Arsenite-resistance protein 2 1.8E-57
Sequence
Target Sequence 
>C. ELEGANS:173364_S_AT
gatgatcgaggacctggtggtggaggaagaaactcttttggcggtggaggatatgatcgt
cgtccccaattccctcctcgacattcacttggtggacgaggtggtggtggacgctacttc
gaggatgcgccacgtcgtcagccagtctcgtatcgcgatttggatgctccagatgatatt
ccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATCGAGGACCTGGTGGTGGAG 167 411 13 Antisense
GACCTGGTGGTGGAGGAAGAAACTC 555 83 23 Antisense
GAAGAAACTCTTTTGGCGGTGGAGG 40 341 38 Antisense
GGTGGAGGATATGATCGTCGTCCCC 395 497 55 Antisense
TGGAGGATATGATCGTCGTCCCCAA 325 549 57 Antisense
CCTCCTCGACATTCACTTGGTGGAC 297 267 85 Antisense
TCCTCGACATTCACTTGGTGGACGA 280 593 87 Antisense
GTGGACGCTACTTCGAGGATGCGCC 107 489 119 Antisense
GCCAGTCTCGTATCGCGATTTGGAT 143 281 153 Antisense
GTCTCGTATCGCGATTTGGATGCTC 368 471 157 Antisense
TTGGATGCTCCAGATGATATTCCAT 71 709 172 Antisense
Sequence Source Affymetrix Proprietary Database