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[173361_s_at]

Description AV200821_rc /REP_DB=TREMBL Accession /GB=AV200821 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk581a7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 66      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_total > 57      4grp_total > 39      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 298.1
(3)
P 		202
(-2.8)
P 		202.6
(-2.7)
P 		198.1
(-3)
P 		100
B 310.2
(3)
P 		188.2
(-3)
P 		194.9
(-2.7)
P 		245.2
(-0.2)
P 		122
C 319.3
(3)
P 		155.8
(-3)
P 		269.3
(1.2)
P 		236.4
(-0)
P 		164
avr 309.2
(3) 		182
(-3) 		222.3
(-1.1) 		226.6
(-0.9) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 142.3
(-0.5)
P 		123.8
(-1.2)
P 		121.1
(-1.3)
P 		110.7
(-1.7)
P 		77.1
(-3)
P 		231.5
(3)
P 		154
B 167.1
(-0.6)
P 		138.6
(-1.2)
P 		100
(-1.9)
P 		125.6
(-1.4)
P 		46.2
(-3)
A 		346.5
(3)
P 		300
C 68
(-3)
P 		125.7
(-1.5)
P 		162.9
(-0.5)
P 		98.9
(-2.2)
P 		84.5
(-2.6)
P 		300.2
(3)
P 		232
avr 125.8
(-1.5) 		129.4
(-1.4) 		128
(-1.4) 		111.7
(-1.9) 		69.3
(-3) 		292.7
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 108.5
(3)
P 		43.9
(-1.9)
P 		53
(-1.2)
P 		29
(-3)
P 		80
B 98.9
(3)
P 		46.5
(-2.9)
P 		45.2
(-3)
P 		52.3
(-2.2)
P 		54
C 105.7
(3)
P 		44.8
(-2.6)
P 		93.8
(1.9)
P 		39.9
(-3)
P 		66
avr 104.4
(3) 		45.1
(-2.6) 		64
(-0.8) 		40.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 26.2
(-2.5)
P 		44
(0.8)
P 		26.4
(-2.4)
P 		28.1
(-2.1)
P 		23.3
(-3)
P 		56.4
(3)
P 		33
B 58.1
(-0.9)
P 		46.1
(-1.5)
P 		24.3
(-2.7)
P 		33.3
(-2.2)
P 		18.8
(-3)
A 		129.2
(3)
P 		110
C 25.2
(-2.6)
P 		38.4
(-1.6)
P 		41.5
(-1.4)
P 		19.9
(-3)
P 		27.3
(-2.4)
P 		100.5
(3)
P 		81
avr 36.5
(-1.9) 		42.8
(-1.4) 		30.7
(-2.4) 		27.1
(-2.7) 		23.1
(-3) 		95.4
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173361_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27764
Sequence Type Exemplar sequence
Representative Public ID AV200821 NCBI
Target Description AV200821_rc /REP_DB=TREMBL Accession /GB=AV200821 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk581a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026512(11), NM_001026513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026512 NCBI Caenorhabditis elegans Y105E8A.24a (Y105E8A.24) mRNA, complete cds. 11/11 None
NM_001026513 NCBI Caenorhabditis elegans Y105E8A.24b (Y105E8A.24) mRNA, complete cds. 11/11 None
SNAP00000013358 ENSEMBL cdna:SNAP chromosome:CEL140:I:14560306:14588979:-1 11/11 None
GENEFINDER00000013493 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14575493:14588979:-1 11/11 None
Y105E8A.24a ENSEMBL cdna:known chromosome:CEL140:I:14575471:14588979:-1 gene:Y105E8A.24 11/11 None
Y105E8A.24b ENSEMBL cdna:known chromosome:CEL140:I:14577636:14588979:-1 gene:Y105E8A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14578375-14579749(-) 99.0 99.0
Public Domain and Genome References
Ensembl Y105E8A.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21673 Hypothetical protein Y105E8A.24a [Caenorhabditis elegans] ref|NP_001021683.1| Y105E8A.24a [Caenorhabditis elegans] 0.0
blast CAD92404 Hypothetical protein Y105E8A.24b [Caenorhabditis elegans] ref|NP_001021684.1| Y105E8A.24b [Caenorhabditis elegans] 0.0
blast CAE72600 Hypothetical protein CBG19790 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 2.0E-80
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 4.5E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013493 1 1169-1191
Sequence
Target Sequence 
>C. ELEGANS:173361_S_AT
ttctacaactgaccgtattccaatacctgatgacgtggcatttgacgaggaaaatatctc
agcttcagcacaaggatccgctcgaggacgtggagattcggaattagatcggaaaaccta
tggagaaatgctttcggatctaccgattcgtcaaacaatgcgggctcggcgagcatctac
aaatctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACAACTGACCGTATTCCAATA 634 689 30 Antisense
GACCGTATTCCAATACCTGATGACG 684 381 40 Antisense
CCTGATGACGTGGCATTTGACGAGG 115 267 55 Antisense
GAGGAAAATATCTCAGCTTCAGCAC 704 403 76 Antisense
TCAGCTTCAGCACAAGGATCCGCTC 98 625 88 Antisense
GGATCCGCTCGAGGACGTGGAGATT 192 513 103 Antisense
GAGGACGTGGAGATTCGGAATTAGA 67 403 113 Antisense
GGAGAAATGCTTTCGGATCTACCGA 681 517 151 Antisense
TCGGATCTACCGATTCGTCAAACAA 689 605 163 Antisense
TTCGTCAAACAATGCGGGCTCGGCG 704 685 176 Antisense
GCTCGGCGAGCATCTACAAATCTCA 653 299 193 Antisense
Sequence Source Affymetrix Proprietary Database