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[173360_at]

Description AV176967_rc /REP_DB=TREMBL Accession /GB=AV176967 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk521b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 86      6grp_total > 64      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 711
1 2 3 4 range
A 971.6
(1.3)
P 		1030.3
(2)
P 		1124.2
(3)
P 		579.3
(-3)
P 		545
B 958
(0.4)
P 		1139.9
(1.9)
P 		1264.6
(3)
P 		553.5
(-3)
P 		711
C 785
(-1.5)
P 		1090.2
(3)
P 		1059.6
(2.5)
P 		684.7
(-3)
P 		406
avr 904.9
(0.3) 		1086.8
(2.3) 		1149.5
(3) 		605.8
(-3) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 796.3
(-1.4)
P 		995.7
(0.4)
P 		1272
(3)
P 		1078.6
(1.2)
P 		629.4
(-3)
P 		1084.1
(1.2)
P 		643
B 744.2
(-2.1)
P 		824.5
(-1.3)
P 		1215.2
(3)
P 		1081.5
(1.5)
P 		664.7
(-3)
P 		895
(-0.5)
P 		551
C 1038.5
(0.2)
P 		823.9
(-3)
P 		1230.2
(3)
P 		1159.5
(2)
P 		900.5
(-1.9)
P 		1183.3
(2.3)
P 		406
avr 859.7
(-1.5) 		881.4
(-1.2) 		1239.1
(3) 		1106.5
(1.4) 		731.5
(-3) 		1054.1
(0.8) 		508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 353.8
(3)
P 		223.7
(0.1)
P 		293.9
(1.7)
P 		84.8
(-3)
P 		269
B 305.5
(3)
P 		281.5
(2.2)
P 		293
(2.6)
P 		118
(-3)
P 		188
C 259.9
(0.4)
P 		313.4
(1.7)
P 		369.3
(3)
P 		115.5
(-3)
P 		254
avr 306.4
(2.7) 		272.9
(1.7) 		318.7
(3) 		106.1
(-3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 146.8
(-3)
P 		354.1
(3)
P 		277
(0.8)
P 		273.5
(0.7)
P 		189.9
(-1.8)
P 		263.9
(0.4)
P 		207
B 258.9
(-3)
P 		274.5
(-1.7)
P 		295.1
(-0.1)
P 		286.5
(-0.8)
P 		270.1
(-2.1)
P 		333.7
(3)
P 		75
C 384.9
(2.6)
P 		251.4
(-2.3)
P 		313.1
(-0.1)
P 		233.2
(-3)
P 		291.4
(-0.9)
P 		396.1
(3)
P 		163
avr 263.5
(-2) 		293.3
(0.2) 		295.1
(0.3) 		264.4
(-2) 		250.5
(-3) 		331.2
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27639
Sequence Type Exemplar sequence
Representative Public ID AV176967 NCBI
Target Description AV176967_rc /REP_DB=TREMBL Accession /GB=AV176967 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk521b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065225(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065225 NCBI Caenorhabditis elegans Y71H2AR.1 (Y71H2AR.1) mRNA, complete cds. 11/11 None
SNAP00000032445 ENSEMBL cdna:SNAP chromosome:CEL140:III:2834653:2836108:1 11/11 None
GENEFINDER00000032449 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2834653:2836108:1 11/11 None
Y71H2AR.1.2 ENSEMBL cdna:known chromosome:CEL140:III:2834651:2836350:1 gene:Y71H2AR.1 11/11 None
Y71H2AR.1.1 ENSEMBL cdna:known chromosome:CEL140:III:2834653:2836350:1 gene:Y71H2AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2835055-2836186(+) 99.67 99.67
Public Domain and Genome References
Gene Title
Ensembl Y71H2AR.1
Entrez Gene 175400 Entrez gene
SwissProt Q9BL27 EMBL-EBI
WormBase CE27323 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29986 Hypothetical protein Y71H2AR.1 [Caenorhabditis elegans] ref|NP_497626.1| Y71H2AR.1 [Caenorhabditis elegans] 1.0E-71
blast CAE57512 Hypothetical protein CBG00487 [Caenorhabditis briggsae] 2.0E-59
blast AAK29986 Hypothetical protein Y71H2AR.1 [Caenorhabditis elegans] ref|NP_497626.1| Y71H2AR.1 [Caenorhabditis elegans] 2.0E-40
blast CAE57512 Hypothetical protein CBG00487 [Caenorhabditis briggsae] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR010357 EMBL-EBI Eukaryotic protein of unknown function DUF953 4.3E-80
Pfam IPR010357 EMBL-EBI Eukaryotic protein of unknown function DUF953 6.1E-22
Pfam IPR010357 EMBL-EBI Eukaryotic protein of unknown function DUF953 4.6E-48
Sequence
Target Sequence 
>C. ELEGANS:173360_AT
tcgccggactcgatgtccattttgtcactgttttcgtcggaaatcgtgaagtatggcgtg
acccagctgtcggattccgtactgatccaacactcaaattgacatgtattccgacacttt
tggaagttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCGGACTCGATGTCCATTTTGT 3 599 28 Antisense
CTCGATGTCCATTTTGTCACTGTTT 117 233 36 Antisense
CCATTTTGTCACTGTTTTCGTCGGA 220 267 44 Antisense
GTCACTGTTTTCGTCGGAAATCGTG 494 463 51 Antisense
GAAATCGTGAAGTATGGCGTGACCC 187 363 67 Antisense
TGAAGTATGGCGTGACCCAGCTGTC 187 575 74 Antisense
ACCCAGCTGTCGGATTCCGTACTGA 51 91 88 Antisense
ATTCCGTACTGATCCAACACTCAAA 175 9 101 Antisense
CTGATCCAACACTCAAATTGACATG 403 237 109 Antisense
AATTGACATGTATTCCGACACTTTT 308 179 124 Antisense
GTATTCCGACACTTTTGGAAGTTGG 134 453 133 Antisense
Sequence Source Affymetrix Proprietary Database