[Home] | [Total List]

[173359_at]

Description AV177104_rc /REP_DB=TREMBL Accession /GB=AV177104 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk523e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 71      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 45      6grp_total > 72      4grp_total > 41      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1352
1 2 3 4 range
A 1203.1
(-3)
P 		2495
(3)
P 		2406.3
(2.6)
P 		1606.2
(-1.1)
P 		1292
B 1151.4
(-3)
P 		2146.7
(1.4)
P 		2502.9
(3)
P 		1633
(-0.9)
P 		1352
C 1213.3
(-3)
P 		2375.2
(3)
P 		2219.3
(2.2)
P 		1834.5
(0.2)
P 		1162
avr 1189.3
(-3) 		2339
(2.8) 		2376.2
(3) 		1691.2
(-0.5) 		1187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1664
1 2 3 4 5 6 range
A 1326.4
(-3)
P 		1494.9
(-2.4)
P 		2811.6
(2.5)
P 		2955.9
(3)
P 		1701.4
(-1.6)
P 		1318.2
(-3)
P 		1638
B 1662.6
(-1.6)
P 		1826.9
(-0.9)
P 		2829.6
(3)
P 		1999.7
(-0.2)
P 		2496.1
(1.7)
P 		1292.1
(-3)
P 		1538
C 1664.1
(-1.9)
P 		1737.5
(-1.6)
P 		1868.8
(-1.1)
P 		2825.5
(3)
P 		2251.4
(0.6)
P 		1415.8
(-3)
P 		1410
avr 1551
(-2) 		1686.4
(-1.3) 		2503.3
(2.6) 		2593.7
(3) 		2149.6
(0.9) 		1342
(-3) 		1252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 438.1
(0.1)
P 		541.6
(1.7)
P 		629.1
(3)
P 		235.1
(-3)
P 		394
B 367.2
(-2.5)
P 		530.2
(1.7)
P 		580
(3)
P 		348
(-3)
P 		232
C 401.6
(-1.8)
P 		682.9
(1.8)
P 		773.5
(3)
P 		309.3
(-3)
P 		464
avr 402.3
(-1.3) 		584.9
(1.7) 		660.9
(3) 		297.5
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 770
1 2 3 4 5 6 range
A 244.5
(-3)
P 		531.7
(0.4)
P 		612.3
(1.4)
P 		749.7
(3)
P 		513.4
(0.2)
P 		320.9
(-2.1)
P 		505
B 578.5
(-1.9)
P 		608.1
(-1.6)
P 		687.1
(-0.7)
P 		529.7
(-2.5)
P 		1014.1
(3)
P 		481.8
(-3)
P 		532
C 616.8
(0.4)
P 		530.1
(-1.7)
P 		475.6
(-3)
P 		568.2
(-0.8)
P 		728.5
(3)
P 		473.9
(-3)
P 		255
avr 479.9
(-2) 		556.6
(-0.6) 		591.7
(0.1) 		615.9
(0.5) 		752
(3) 		425.5
(-3) 		327
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27972
Sequence Type Exemplar sequence
Representative Public ID AV177104 NCBI
Target Description AV177104_rc /REP_DB=TREMBL Accession /GB=AV177104 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk523e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058523 NCBI Caenorhabditis elegans Y37E3.4 (Y37E3.4) mRNA, complete cds. 11/11 None
SNAP00000001186 ENSEMBL cdna:SNAP chromosome:CEL140:I:2065070:2065381:1 11/11 None
GENEFINDER00000001215 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2065070:2069051:1 11/11 None
Y37E3.4.1 ENSEMBL cdna:known chromosome:CEL140:I:2064976:2065483:1 gene:Y37E3.4 11/11 None
Y37E3.4.2 ENSEMBL cdna:known chromosome:CEL140:I:2064978:2065483:1 gene:Y37E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2065045-2065419(+) 93.39 93.39
Public Domain and Genome References
Gene Title
Ensembl Y37E3.4
Entrez Gene 171764 Entrez gene
SwissProt Q9BKU8 EMBL-EBI
WormBase CE26771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490925 Y37E3.5 [Caenorhabditis elegans] gb|AAK27876.1| Hypothetical protein Y37E3.5 [Caenorhabditis elegans] 6.0E-72
blast CAE74332 Hypothetical protein CBG22045 [Caenorhabditis briggsae] 1.0E-53
blast NP_490924 Y37E3.4 [Caenorhabditis elegans] gb|AAK27862.1| Hypothetical protein Y37E3.4 [Caenorhabditis elegans] 4.0E-25
blast NP_490924 Y37E3.4 [Caenorhabditis elegans] gb|AAK27862.1| Hypothetical protein Y37E3.4 [Caenorhabditis elegans] 1.0E-23
blast CAE74333 Hypothetical protein CBG22046 [Caenorhabditis briggsae] 9.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR007513 EMBL-EBI Four F5 protein 8.2E-35
Sequence
Target Sequence 
>C. ELEGANS:173359_AT
gagatctggctcgtgagaagaaccaaaagaaactggccgatcaaaagaagcgccagggag
cctctggacaagacggaaatgctggtctatcgatggatgctcgcatgaatcgcgacgctg
acgtcatgcgtatcaagcaggagaaagcggcagccaagaaagaagccgaagccgctgcag
ctgctgcaaacgcaaagaaggtcgccaaagtggacccattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCTGGCTCGTGAGAAGAACCA 184 397 69 Antisense
GAAACTGGCCGATCAAAAGAAGCGC 21 359 97 Antisense
AAAGAAGCGCCAGGGAGCCTCTGGA 79 123 112 Antisense
GGGAGCCTCTGGACAAGACGGAAAT 283 495 124 Antisense
GCTGGTCTATCGATGGATGCTCGCA 183 295 149 Antisense
GGATGCTCGCATGAATCGCGACGCT 538 513 163 Antisense
GAATCGCGACGCTGACGTCATGCGT 368 329 175 Antisense
GCTGACGTCATGCGTATCAAGCAGG 516 293 185 Antisense
CAAGCAGGAGAAAGCGGCAGCCAAG 468 185 202 Antisense
TGCAGCTGCTGCAAACGCAAAGAAG 178 577 244 Antisense
GAAGGTCGCCAAAGTGGACCCATTG 481 333 265 Antisense
Sequence Source Affymetrix Proprietary Database