[Home] | [Total List]

[173358_s_at]

Description AV184930_rc /REP_DB=TREMBL Accession /GB=AV184930 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 58      6grp_total > 58      4grp_total > 33      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2503
1 2 3 4 range
A 3919
(-3)
P 		6247.9
(3)
P 		5131.1
(0.1)
P 		5399.5
(0.8)
P 		2329
B 4134.9
(-3)
P 		4389.3
(-0.2)
P 		4686.7
(3)
P 		4658.9
(2.7)
P 		552
C 3745.4
(-3)
P 		4620.6
(1.2)
P 		4986.9
(3)
P 		4730
(1.8)
P 		1242
avr 3933.1
(-3) 		5085.9
(3) 		4934.9
(2.2) 		4929.5
(2.2) 		1153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1297
1 2 3 4 5 6 range
A 3108.5
(3)
P 		2620.3
(-1.6)
P 		2702.1
(-0.8)
P 		2470
(-3)
P 		2651
(-1.3)
P 		2927.9
(1.3)
P 		639
B 2962
(0.7)
P 		2905.8
(0.4)
P 		2780.9
(-0.4)
P 		2352.5
(-3)
P 		2799.3
(-0.3)
P 		3342
(3)
P 		990
C 2815.9
(-0.4)
P 		2726.9
(-0.8)
P 		2509.5
(-1.8)
P 		2255.2
(-3)
P 		2540.4
(-1.7)
P 		3551.7
(3)
P 		1297
avr 2962.1
(1) 		2751
(-0.4) 		2664.2
(-1) 		2359.2
(-3) 		2663.6
(-1) 		3273.9
(3) 		915
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 948
1 2 3 4 range
A 1426.9
(3)
P 		1356.2
(2.3)
P 		1341.4
(2.2)
P 		790.4
(-3)
P 		637
B 1318.6
(3)
P 		1084.1
(-1.3)
P 		1086
(-1.3)
P 		992.8
(-3)
P 		326
C 1239.8
(-0.2)
P 		1328.5
(0.4)
P 		1738.1
(3)
P 		797.5
(-3)
P 		941
avr 1328.4
(2.3) 		1256.3
(1.5) 		1388.5
(3) 		860.2
(-3) 		528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 793
1 2 3 4 5 6 range
A 573
(-3)
P 		931.9
(3)
P 		588.5
(-2.7)
P 		626.4
(-2.1)
P 		799.9
(0.8)
P 		712.8
(-0.7)
P 		359
B 1030.6
(0.9)
P 		967.2
(0.3)
P 		675.3
(-2.5)
P 		623.1
(-3)
P 		1137.3
(2)
P 		1246.2
(3)
P 		623
C 1043.7
(1.8)
P 		832
(0.1)
P 		638.7
(-1.5)
P 		453.5
(-3)
P 		822
(0)
P 		1189
(3)
P 		736
avr 882.4
(0.9) 		910.4
(1.3) 		634.2
(-2.2) 		567.7
(-3) 		919.7
(1.4) 		1049.3
(3) 		482
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173358_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27749
Sequence Type Exemplar sequence
Representative Public ID AV184930 NCBI
Target Description AV184930_rc /REP_DB=TREMBL Accession /GB=AV184930 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066583 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.D) (eif-3.D) mRNA, complete cds. 11/11 A 
SNAP00000003055 ENSEMBL cdna:SNAP chromosome:CEL140:III:8969634:8971481:-1 11/11 None
GENEFINDER00000003068 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8969634:8971481:-1 11/11 None
R08D7.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8969551:8971483:-1 gene:R08D7.3 11/11 None
R08D7.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8969551:8971489:-1 gene:R08D7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8969706-8969940(-) 74.19 74.19
Public Domain and Genome References
Gene Title
Gene Symbol eif-3.D
Ensembl R08D7.3
Entrez Gene 176268 Entrez gene
SwissProt P30642 EMBL-EBI
WormBase CE00291 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249040_AT eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative at
CANINE:1591570_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE:1585258_S_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE:1585257_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE_2:CFA.12460.1.A1_S_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
DROSOPHILA_2:1630063_A_AT Eukaryotic initiation factor 3 p66 subunit dm
DROSGENOME1:153314_AT Eukaryotic initiation factor 3 p66 subunit dm
PLASMODIUM_ANOPHELES:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-FOCUS:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133_PLUS_2:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133A:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133B:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133A_2:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
U133_X3P:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U95AV2:35298_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBA:AA094800_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBC:RC_R48608_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBD:RC_W38173_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
U133_X3P:G4503522_3P_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U95B:48688_AT Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBB:RC_T95909_AT Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
MOE430A:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MOUSE430_2:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MOUSE430A_2:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MU11KSUBB:Z31134_S_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MG-U74AV2:99101_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MG-U74BV2:165354_R_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MU19KSUBC:TC39172_AT Eukaryotic translation initiation factor 3, subunit 7 (zeta) (Eif3s7), mRNA mm
RG-U34A:RC_AA891553_AT eukaryotic translation initiation factor 3 subunit 7 rn
RAE230A:1388568_AT eukaryotic translation initiation factor 3 subunit 7 rn
RAT230_2:1388568_AT eukaryotic translation initiation factor 3 subunit 7 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6413 translational initiation inferred from electronic annotation QuickGO AmiGO
6413 translational initiation inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5852 eukaryotic translation initiation factor 3 complex inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3743 translation initiation factor activity inferred from electronic annotation QuickGO AmiGO
3743 translation initiation factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA78049 Hypothetical protein R08D7.3 [Caenorhabditis elegans] ref|NP_498984.1| Eukaryotic Initiation Factor family member (eif-3.D) [Caenorhabditis elegans] sp|P30642|IF37_CAEEL Putative eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3d) 0.0
blast CAE62694 Hypothetical protein CBG06842 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007783 EMBL-EBI Eukaryotic translation initiation factor 3, subunit 7 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173358_S_AT
tgcacgcagcacacaaaatcattctattctactcacccaatacgtaaagccaacggagtt
tgctagcaacatcgccttgaacatggataactgctggggaattcttagatgcgtcattga
cagttgtatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACGCAGCACACAAAATCATTCT 76 579 17 Antisense
AAAATCATTCTATTCTACTCACCCA 633 133 31 Antisense
TTCTATTCTACTCACCCAATACGTA 569 687 38 Antisense
TACTCACCCAATACGTAAAGCCAAC 581 645 46 Antisense
GTAAAGCCAACGGAGTTTGCTAGCA 354 461 60 Antisense
GTTTGCTAGCAACATCGCCTTGAAC 279 451 74 Antisense
AGCAACATCGCCTTGAACATGGATA 12 77 81 Antisense
GAACATGGATAACTGCTGGGGAATT 69 351 95 Antisense
ACTGCTGGGGAATTCTTAGATGCGT 60 99 106 Antisense
GGGAATTCTTAGATGCGTCATTGAC 380 493 113 Antisense
GATGCGTCATTGACAGTTGTATGAA 344 413 124 Antisense
Sequence Source Affymetrix Proprietary Database