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[173357_s_at]

Description AU115168_rc /REP_DB=TREMBL Accession /GB=AU115168 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk726f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 42      6grp_total > 33      4grp_total > 60      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 745
1 2 3 4 range
A 1037.1
(3)
P 		891.4
(1.5)
P 		959.6
(2.2)
P 		454.3
(-3)
P 		583
B 1041.5
(2.2)
P 		831.2
(0.2)
P 		1124.8
(3)
P 		485.8
(-3)
P 		639
C 923
(0.6)
P 		983.3
(1.1)
P 		1198.9
(3)
P 		515.7
(-3)
P 		683
avr 1000.5
(2.1) 		902
(1.1) 		1094.4
(3) 		485.3
(-3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 679.3
(-0.9)
P 		909.1
(2.1)
P 		979.5
(3)
P 		792.9
(0.6)
P 		544
(-2.6)
P 		516.3
(-3)
P 		463
B 971.1
(1.4)
P 		1046.1
(2.1)
P 		1130.6
(3)
P 		585.6
(-2.6)
P 		909.3
(0.7)
P 		543.7
(-3)
P 		587
C 999.1
(3)
P 		832.3
(0.5)
P 		869.1
(1.1)
P 		591.3
(-3)
P 		770.9
(-0.4)
P 		618.7
(-2.6)
P 		408
avr 883.2
(1.5) 		929.2
(2.1) 		993.1
(3) 		656.6
(-1.7) 		741.4
(-0.5) 		559.6
(-3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 377.6
(3)
P 		193.5
(-0.6)
P 		250.9
(0.6)
P 		66.5
(-3)
P 		311
B 332.1
(3)
P 		205.3
(-0.3)
P 		260.7
(1.1)
P 		103.5
(-3)
P 		229
C 305.6
(1)
P 		282.7
(0.5)
P 		417.8
(3)
P 		87
(-3)
P 		331
avr 338.4
(3) 		227.2
(0.4) 		309.8
(2.3) 		85.7
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 125.2
(-3)
P 		323.3
(3)
P 		213.3
(-0.3)
P 		201.1
(-0.7)
P 		164.2
(-1.8)
P 		125.7
(-3)
P 		198
B 337.9
(2.1)
P 		348.2
(2.4)
P 		274.5
(0.3)
P 		155.1
(-3)
P 		369.4
(3)
P 		202.8
(-1.7)
P 		214
C 370.3
(3)
P 		253.9
(0.2)
P 		221.2
(-0.6)
P 		118.9
(-3)
P 		249.4
(0.1)
P 		207.1
(-0.9)
P 		251
avr 277.8
(1.8) 		308.5
(3) 		236.3
(0.1) 		158.4
(-3) 		261
(1.1) 		178.5
(-2.2) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173357_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27930
Sequence Type Exemplar sequence
Representative Public ID AU115168 NCBI
Target Description AU115168_rc /REP_DB=TREMBL Accession /GB=AU115168 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk726f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065274 NCBI Caenorhabditis elegans Y53G8AL.2 (Y53G8AL.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000028030 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3241853:3248562:-1 11/11 None
SNAP00000028026 ENSEMBL cdna:SNAP chromosome:CEL140:III:3241868:3248562:-1 11/11 None
Y53G8AL.2.2 ENSEMBL cdna:known chromosome:CEL140:III:3241712:3248566:-1 gene:Y53G8AL.2 11/11 A 
Y53G8AL.2.1 ENSEMBL cdna:known chromosome:CEL140:III:3241712:3248564:-1 gene:Y53G8AL.2 11/11 A 
Y53G8AL.2.3 ENSEMBL cdna:known chromosome:CEL140:III:3241725:3248569:-1 gene:Y53G8AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3241862-3242105(-) 64.29 64.29
Public Domain and Genome References
Gene Title
Ensembl Y53G8AL.2
Entrez Gene 175429 Entrez gene
SwissProt Q9N3H3 EMBL-EBI
WormBase CE26163 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12820_AT expressed protein at
ATH1-121501:265286_AT expressed protein at
CANINE:1604362_AT similar to NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial precursor (Complex I-39KD) (CI-39KD) cfa
CANINE_2:CFA.16743.1.S1_AT similar to NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial precursor (Complex I-39KD) (CI-39KD) cfa
CANINE_2:CFA.16743.1.S1_S_AT similar to NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial precursor (Complex I-39KD) (CI-39KD) cfa
DROSOPHILA_2:1633965_AT dm
DROSGENOME1:153309_AT dm
CHICKEN:GGAAFFX.13087.1.S1_S_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa gga
CHICKEN:GGA.1626.1.S1_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa gga
HG-U133A:208969_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-U133A_2:208969_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-U133_PLUS_2:208969_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-FOCUS:208969_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HUGENEFL:L04490_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
U133_X3P:G5326822_3P_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-U95D:73284_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-U95AV2:36205_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HG-U95E:72458_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
HU35KSUBB:RC_AA084343_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa hs
MG-U74AV2:96321_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 mm
MG-U74CV2:168982_I_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 mm
MOE430A:1416663_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 mm
MOUSE430A_2:1416663_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 mm
MOUSE430_2:1416663_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 mm
MU19KSUBA:TC19194_AT NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, mRNA (cDNA clone IMAGE:3601317) mm
Protein Similarities
Method ID Description E-Value
blast AAF59528 Hypothetical protein Y53G8AL.2 [Caenorhabditis elegans] ref|NP_497675.1| Y53G8AL.2 [Caenorhabditis elegans] 0.0
blast CAE72965 Hypothetical protein CBG20301 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173357_S_AT
gtaaagttccactcaacagagaatggatggagtttgtggaagtacaatcggacattttga
cgggcgaaagaactctcgccgacctcggagtccgccgattgactgaattcgaattggctg
gtggacaacaagcattttatcgatcatttaatcgatatttcgaagaacaatatggagaac
ttccggctccatcacttccacttcgttcaccaccacttaccnnnnngaacactggccgag
gagcaactggaatcaagtcggaaacga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAAGTTCCACTCAACAGAGAATG 411 459 13 Antisense
GTACAATCGGACATTTTGACGGGCG 365 443 54 Antisense
GACATTTTGACGGGCGAAAGAACTC 581 365 63 Antisense
CGGGCGAAAGAACTCTCGCCGACCT 554 243 73 Antisense
CCTCGGAGTCCGCCGATTGACTGAA 483 267 95 Antisense
GAGTCCGCCGATTGACTGAATTCGA 707 399 100 Antisense
GCCGATTGACTGAATTCGAATTGGC 481 283 106 Antisense
GAATTGGCTGGTGGACAACAAGCAT 418 321 123 Antisense
GAACACTGGCCGAGGAGCAACTGGA 15 351 239 Antisense
CTGGCCGAGGAGCAACTGGAATCAA 357 235 244 Antisense
GCAACTGGAATCAAGTCGGAAACGA 62 319 255 Antisense
Sequence Source Affymetrix Proprietary Database