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[173354_s_at]

Description AV185142_rc /REP_DB=TREMBL Accession /GB=AV185142 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk674b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 21      6grp_total > 15      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1694
1 2 3 4 range
A 1618.3
(-0.6)
P 		1394.9
(-1.6)
P 		1077.2
(-3)
P 		2432.4
(3)
P 		1355
B 1982.2
(0.4)
P 		1154.8
(-3)
P 		1269.8
(-2.5)
P 		2612.4
(3)
P 		1458
C 1823.5
(0.7)
P 		918.8
(-3)
P 		1021.3
(-2.6)
P 		2384.5
(3)
P 		1466
avr 1808
(0) 		1156.2
(-2.9) 		1122.8
(-3) 		2476.4
(3) 		1354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1380
1 2 3 4 5 6 range
A 2129
(3)
P 		1584.9
(0.4)
P 		1181.1
(-1.5)
P 		977.7
(-2.5)
P 		1078.5
(-2)
P 		877.3
(-3)
P 		1252
B 1474.9
(1.5)
P 		1668.2
(3)
P 		1031.1
(-1.9)
P 		981.5
(-2.3)
P 		890
(-3)
P 		888.3
(-3)
P 		780
C 1452.9
(2.2)
P 		1562.2
(3)
P 		1172.4
(0.1)
P 		1073.5
(-0.6)
P 		1062.9
(-0.7)
P 		748.6
(-3)
P 		814
avr 1685.6
(3) 		1605.1
(2.4) 		1128.2
(-0.9) 		1010.9
(-1.8) 		1010.5
(-1.8) 		838.1
(-3) 		848
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 589.2
(3)
P 		302.8
(-2.6)
P 		281.6
(-3)
P 		356.1
(-1.5)
P 		308
B 632.1
(3)
P 		285.2
(-3)
P 		294.2
(-2.8)
P 		556.7
(1.7)
P 		347
C 603.6
(3)
P 		264.2
(-3)
P 		356
(-1.4)
P 		402.1
(-0.6)
P 		339
avr 608.3
(3) 		284.1
(-3) 		310.6
(-2.5) 		438.3
(-0.1) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 392.5
(0.1)
P 		563.7
(3)
P 		257.2
(-2.3)
P 		248
(-2.4)
P 		325.4
(-1.1)
P 		213.6
(-3)
P 		350
B 513.2
(2.2)
P 		555.3
(3)
P 		250.4
(-3)
P 		260
(-2.8)
P 		361.6
(-0.8)
P 		331.3
(-1.4)
P 		305
C 538.5
(3)
P 		476.7
(1.9)
P 		298.4
(-1.5)
P 		215.9
(-3)
P 		343.9
(-0.6)
P 		250.6
(-2.4)
P 		323
avr 481.4
(2) 		531.9
(3) 		268.7
(-2.4) 		241.3
(-3) 		343.6
(-0.9) 		265.2
(-2.5) 		291
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173354_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27885
Sequence Type Exemplar sequence
Representative Public ID AV185142 NCBI
Target Description AV185142_rc /REP_DB=TREMBL Accession /GB=AV185142 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk674b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026273 NCBI Caenorhabditis elegans DAP (Death Associated Protein kinase) Like Kinase family member (dlk-1) (dlk-1) mRNA, complete cds. 11/11 None
F33E2.2b ENSEMBL cdna:known chromosome:CEL140:I:12573917:12580917:-1 gene:F33E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173128 3 1 NM_001026272 192208_s_at (11)
NM_001026273 173354_s_at (11), 192208_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12573967-12574271(-) 74.13 75.62
Public Domain and Genome References
Ensembl F33E2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54891 Hypothetical protein F33E2.2b [Caenorhabditis elegans] emb|CAE54889.1| Hypothetical protein F33E2.2b [Caenorhabditis elegans] ref|NP_001021444.1| DAP (Death Associated Protein kinase) Like Kinase family member (dlk-1) [Caenorhabditis elegans] 0.0
blast CAB06544 Hypothetical protein F33E2.2a [Caenorhabditis elegans] emb|CAA18635.3| Hypothetical protein F33E2.2a [Caenorhabditis elegans] ref|NP_001021443.1| DAP (Death Associated Protein kinase) Like Kinase family member (dlk-1) [Caenorhabditis elegans] 0.0
blast CAE64099 Hypothetical protein CBG08707 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.13 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; ACMPK 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-69
Sequence
Target Sequence 
>C. ELEGANS:173354_S_AT
ttcctccacatctcaatttgttcattcattccagagctannnnngccattttcaaagtac
ttacagtagtccctatgtccctgtaaactctagttttgtagaacgaatcccagtgaacac
cggttcct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTCCACATCTCAATTTGTTCAT 49 701 175 Antisense
ATCTCAATTTGTTCATTCATTCCAG 171 33 184 Antisense
AATTTGTTCATTCATTCCAGAGCTA 21 175 189 Antisense
GCCATTTTCAAAGTACTTACAGTAG 585 279 219 Antisense
GTACTTACAGTAGTCCCTATGTCCC 462 459 231 Antisense
TACAGTAGTCCCTATGTCCCTGTAA 592 643 236 Antisense
TCCCTATGTCCCTGTAAACTCTAGT 389 597 244 Antisense
GTCCCTGTAAACTCTAGTTTTGTAG 94 115 251 Antisense
GTTTTGTAGAACGAATCCCAGTGAA 653 447 267 Antisense
AGAACGAATCCCAGTGAACACCGGT 82 73 274 Antisense
CGAATCCCAGTGAACACCGGTTCCT 402 247 278 Antisense
Sequence Source Affymetrix Proprietary Database