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[173353_s_at]

Description AV184886_rc /REP_DB=TREMBL Accession /GB=AV184886 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670g3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 93      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_total > 99      4grp_total > 32      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 58.3
(-3)
P 		113.2
(1)
P 		77.4
(-1.6)
P 		140.2
(3)
P 		82
B 41
(-3)
P 		77.4
(-0.1)
P 		117
(3)
P 		82.9
(0.3)
P 		76
C 63.4
(-3)
P 		89.5
(-0.1)
P 		117.2
(3)
P 		73.1
(-1.9)
P 		54
avr 54.2
(-3) 		93.4
(1.7) 		103.9
(3) 		98.7
(2.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 77.8
(-0)
A 		82.4
(0.4)
P 		76.4
(-0.2)
P 		45.6
(-3)
A 		77.5
(-0.1)
P 		110.7
(3)
P 		65
B 73.4
(-2.2)
P 		63.8
(-3)
P 		76.6
(-1.9)
P 		116.8
(1.7)
P 		108.8
(1)
P 		132
(3)
P 		68
C 89.4
(0.5)
P 		62
(-1.3)
P 		80.4
(-0.1)
P 		35.8
(-3)
A 		126.8
(3)
P 		91.3
(0.7)
P 		91
avr 80.2
(-1.1) 		69.4
(-2.6) 		77.8
(-1.4) 		66.1
(-3) 		104.4
(2.1) 		111.3
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.2
(-1.6)
P 		24.6
(3)
P 		20.2
(-3)
P 		20.5
(-2.6)
P 		4
B 13.1
(-3)
P 		19.1
(-0.4)
P 		27.1
(3)
P 		17.7
(-1)
P 		14
C 21
(-1.2)
P 		25.7
(-0.2)
P 		40.8
(3)
P 		12.3
(-3)
P 		29
avr 18.4
(-2.2) 		23.1
(0) 		29.4
(3) 		16.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 14.3
(-2.1)
A 		29.3
(3)
P 		16.6
(-1.3)
P 		11.6
(-3)
A 		23.4
(1)
P 		27
(2.2)
P 		18
B 25.5
(-1.6)
P 		21.2
(-2.5)
P 		18.6
(-3)
P 		30.9
(-0.6)
P 		44.2
(2)
P 		49.2
(3)
P 		31
C 33.2
(1.6)
P 		18.9
(-0.9)
P 		20.5
(-0.6)
P 		7.2
(-3)
A 		41
(3)
P 		30.6
(1.2)
P 		34
avr 24.3
(-0.6) 		23.1
(-1) 		18.6
(-2.4) 		16.6
(-3) 		36.2
(3) 		35.6
(2.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173353_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27858
Sequence Type Exemplar sequence
Representative Public ID AV184886 NCBI
Target Description AV184886_rc /REP_DB=TREMBL Accession /GB=AV184886 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065019 NCBI Caenorhabditis elegans Y67D2.6 (Y67D2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000022356 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:39220:41883:1 11/11 None
SNAP00000022296 ENSEMBL cdna:SNAP chromosome:CEL140:X:40976:41883:1 10/11 None
Y67D2.6 ENSEMBL cdna:known chromosome:CEL140:III:1544928:1554431:-1 gene:Y67D2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075681 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000002902 7/11 Cross Hyb Matching Probes None
GENEFINDER00000002899 2/11 Cross Hyb Matching Probes None
Y73B3A.21 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1545018-1546629(-) 95.71 96.37
Public Domain and Genome References
Gene Title
Ensembl Y67D2.6
Entrez Gene 175308 Entrez gene
SwissProt Q9BKQ8 EMBL-EBI
WormBase CE27311 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14034_AT RNA helicase, putative at
ATH1-121501:254675_AT RNA helicase, putative at
CANINE_2:CFAAFFX.14277.1.S1_AT similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) cfa
CANINE_2:CFAAFFX.14277.1.S1_S_AT similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) cfa
CANINE_2:CFAAFFX.14282.1.S1_AT similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) cfa
DROSOPHILA_2:1633686_AT dm
DROSGENOME1:153729_AT dm
CHICKEN:GGAAFFX.2286.3.S1_S_AT similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) gga
HG-U133_PLUS_2:234728_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133B:234728_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133_PLUS_2:218579_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133A:218579_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133A_2:218579_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HU35KSUBA:RC_AA418610_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
U133_X3P:G11345467_3P_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
U133_X3P:HS.7174.1.S1_3P_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U95C:64916_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
U133_X3P:HS2.384587.1.S1_3P_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133_PLUS_2:1561132_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133_PLUS_2:241006_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U133B:241006_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U95C:62436_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
HG-U95D:73982_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
U133_X3P:HS.232029.0.A1_3P_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 hs
MU11KSUBB:MSA.13975.0_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 mm
MG-U74BV2:163681_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 mm
MOE430B:1452693_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 mm
MOUSE430_2:1452693_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 mm
RAE230B:1382877_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 (predicted) rn
RAT230_2:1382877_AT DEAH (Asp-Glu-Ala-His) box polypeptide 35 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK27888 Hypothetical protein Y67D2.6 [Caenorhabditis elegans] ref|NP_497420.1| Y67D2.6 [Caenorhabditis elegans] sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent helicase DHX35 homolog 0.0
blast CAE69187 Hypothetical protein CBG15221 [Caenorhabditis briggsae] 0.0
blast XP_342566 PREDICTED: similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) [Rattus norvegicus] 0.0
blast AAK39368 Hypothetical protein Y73B3A.21 [Caenorhabditis elegans] ref|NP_508082.1| Y73B3A.21 [Caenorhabditis elegans] 1.0E-104
blast AAK27888 Hypothetical protein Y67D2.6 [Caenorhabditis elegans] ref|NP_497420.1| Y67D2.6 [Caenorhabditis elegans] sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent helicase DHX35 homolog 7.0E-38
blast AAK27888 Hypothetical protein Y67D2.6 [Caenorhabditis elegans] ref|NP_497420.1| Y67D2.6 [Caenorhabditis elegans] sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent helicase DHX35 homolog 7.0E-34
blast CAE69187 Hypothetical protein CBG15221 [Caenorhabditis briggsae] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 4.4E-45
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.3E-15
Pfam IPR000642 EMBL-EBI Peptidase M41 4.7E-30
Sequence
Target Sequence 
>C. ELEGANS:173353_S_AT
agcttccccttcaatatgtacaaaggatcgtcgattatgttcaagaaagactatccgaaa
tgggtaatcttcaccgaagtgatgcaggattcgatccgtgacgtcacagttattgagcct
gaatggctttacgaattggctccacactattacgaatttggcaccgaaggagagctcgcc
gagaagagaatgaggggtcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTCCCCTTCAATATGTACAAAG 435 77 62 Antisense
AAAGGATCGTCGATTATGTTCAAGA 428 121 83 Antisense
GGTAATCTTCACCGAAGTGATGCAG 211 503 124 Antisense
GATGCAGGATTCGATCCGTGACGTC 312 413 142 Antisense
AGGATTCGATCCGTGACGTCACAGT 306 55 147 Antisense
GTGACGTCACAGTTATTGAGCCTGA 412 483 159 Antisense
GCCTGAATGGCTTTACGAATTGGCT 480 283 178 Antisense
GAATTGGCTCCACACTATTACGAAT 629 323 194 Antisense
CACACTATTACGAATTTGGCACCGA 612 193 204 Antisense
TTGGCACCGAAGGAGAGCTCGCCGA 190 705 219 Antisense
GCCGAGAAGAGAATGAGGGGTCCTG 321 283 239 Antisense
Sequence Source Affymetrix Proprietary Database