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[173351_s_at] 60S ribosomal protein L35

Description AU115810_rc /REP_DB=TREMBL Accession /GB=AU115810 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 50      4grp_total > 17      6grp_highest_sub > 03_04      6grp_cgc > 93      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19572
1 2 3 4 range
A 27285.6
(-3)
P 		35905.3
(-0.2)
P 		34629.3
(-0.6)
P 		45793.9
(3)
P 		18508
B 29807.8
(-3)
P 		31201.8
(-1.8)
P 		34090.6
(0.6)
P 		37034.6
(3)
P 		7227
C 26221.6
(-3)
P 		29853.8
(-1.9)
P 		26355
(-3)
P 		45245
(3)
P 		19023
avr 27771.7
(-3) 		32320.3
(-1.2) 		31691.6
(-1.4) 		42691.2
(3) 		14920

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11839
1 2 3 4 5 6 range
A 34632.3
(3)
P 		27164.2
(-2.1)
P 		31733.8
(1)
P 		31934.4
(1.2)
P 		25843.3
(-3)
P 		28892.5
(-0.9)
P 		8789
B 24714.2
(-0.9)
P 		28162.4
(3)
P 		27705.5
(2.5)
P 		28190.8
(3)
P 		22793.2
(-3)
P 		23511.3
(-2.2)
P 		5398
C 23887.2
(-3)
P 		28671.3
(0.3)
P 		31635.2
(2.4)
P 		32491.9
(3)
P 		24921.7
(-2.3)
P 		24045.6
(-2.9)
P 		8605
avr 27744.6
(0) 		27999.3
(0.3) 		30358.2
(2.5) 		30872.4
(3) 		24519.4
(-3) 		25483.1
(-2.1) 		6353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3231
1 2 3 4 range
A 9934.7
(3)
P 		7794.1
(-1)
P 		9052.8
(1.4)
P 		6703.3
(-3)
P 		3231
B 9505.5
(3)
P 		7706.1
(-3)
P 		7899.6
(-2.4)
P 		7892.1
(-2.4)
P 		1799
C 8680.1
(1.1)
P 		8583.2
(0.7)
P 		9185.5
(3)
P 		7629
(-3)
P 		1557
avr 9373.4
(3) 		8027.8
(-1.1) 		8712.6
(1) 		7408.1
(-3) 		1965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3277
1 2 3 4 5 6 range
A 6384.2
(-3)
P 		9660.9
(3)
P 		6910.9
(-2)
P 		8099.3
(0.1)
P 		7798.4
(-0.4)
P 		7034.4
(-1.8)
P 		3277
B 8599.3
(1.2)
P 		9374.1
(3)
P 		6727.7
(-3)
P 		7466.8
(-1.3)
P 		9260.6
(2.7)
P 		8767.3
(1.6)
P 		2646
C 8853.9
(3)
P 		8748.5
(2.7)
P 		8051.7
(0.9)
P 		6534.2
(-3)
P 		8064.3
(1)
P 		8049.5
(0.9)
P 		2320
avr 7945.8
(-0.9) 		9261.2
(3) 		7230.1
(-3) 		7366.8
(-2.6) 		8374.4
(0.4) 		7950.4
(-0.9) 		2031
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173351_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27665
Sequence Type Exemplar sequence
Representative Public ID AU115810 NCBI
Target Description AU115810_rc /REP_DB=TREMBL Accession /GB=AU115810 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066301 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-35) (rpl-35) mRNA, complete cds. 11/11 A 
SNAP00000029626 ENSEMBL cdna:SNAP chromosome:CEL140:III:7855071:7855495:1 11/11 None
GENEFINDER00000029635 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7855071:7855495:1 11/11 None
ZK652.4.4 ENSEMBL cdna:known chromosome:CEL140:III:7855037:7856009:1 gene:ZK652.4 11/11 A 
ZK652.4.1 ENSEMBL cdna:known chromosome:CEL140:III:7855039:7855820:1 gene:ZK652.4 11/11 A 
ZK652.4.6 ENSEMBL cdna:known chromosome:CEL140:III:7855039:7855586:1 gene:ZK652.4 11/11 None
ZK652.4.7 ENSEMBL cdna:known chromosome:CEL140:III:7855053:7855570:1 gene:ZK652.4 11/11 None
ZK652.4.5 ENSEMBL cdna:known chromosome:CEL140:III:7855055:7855600:1 gene:ZK652.4 11/11 A 
ZK652.4.2 ENSEMBL cdna:known chromosome:CEL140:III:7855055:7855820:1 gene:ZK652.4 11/11 A 
ZK652.4.3 ENSEMBL cdna:known chromosome:CEL140:III:7855055:7855624:1 gene:ZK652.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7855203-7855504(+) 75.63 75.63
Public Domain and Genome References
Gene Title 60S ribosomal protein L35
Gene Symbol rpl-35
Ensembl ZK652.4
Entrez Gene 176097 Entrez gene
SwissProt P34662 EMBL-EBI
WormBase CE00450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251007_AT 60S ribosomal protein L35 (RPL35D) at
CANINE:1604141_AT similar to 60S ribosomal protein L35 cfa
CANINE:1595841_S_AT similar to 60S ribosomal protein L35 cfa
CANINE:1595840_AT similar to 60S ribosomal protein L35 cfa
CANINE:1591752_AT similar to 60S ribosomal protein L35 cfa
CANINE_2:CFA.9573.2.A1_A_AT similar to 60S ribosomal protein L35 cfa
CANINE_2:CFA.9573.3.S1_AT similar to 60S ribosomal protein L35 cfa
CANINE_2:CFAAFFX.30959.1.S1_S_AT similar to 60S ribosomal protein L35 cfa
DROSOPHILA_2:1627206_AT Ribosomal protein L35 dm
DROSOPHILA_2:1635917_AT Ribosomal protein L35 dm
DROSOPHILA_2:1626209_A_AT Ribosomal protein L35 dm
DROSGENOME1:144535_AT Ribosomal protein L35 dm
CHICKEN:GGA.4064.1.S1_AT ribosomal protein L35 gga
PLASMODIUM_ANOPHELES:200002_AT ribosomal protein L35 hs
HG-FOCUS:200002_AT ribosomal protein L35 hs
HG-U133A:200002_AT ribosomal protein L35 hs
HG-U133_PLUS_2:200002_AT ribosomal protein L35 hs
U133_X3P:200002_AT ribosomal protein L35 hs
HG-U133B:200002_AT ribosomal protein L35 hs
HG-U133A_2:200002_AT ribosomal protein L35 hs
HG-U95AV2:41765_AT ribosomal protein L35 hs
HUGENEFL:U12465_AT ribosomal protein L35 hs
U133_X3P:G6005859_3P_X_AT ribosomal protein L35 hs
U133_X3P:G6005859_3P_S_AT ribosomal protein L35 hs
U133_X3P:G6005859_3P_AT ribosomal protein L35 hs
HG-U95AV2:32218_AT Ribosomal protein L35 hs
HG-U133_PLUS_2:211976_AT Ribosomal protein L35 hs
HG-U133A_2:211976_AT Ribosomal protein L35 hs
HG-U133A:211976_AT Ribosomal protein L35 hs
HG-U133_PLUS_2:211456_X_AT Similar to 60S ribosomal protein L35 hs
HG-U133A:211456_X_AT Similar to 60S ribosomal protein L35 hs
HG-U133A_2:211456_X_AT Similar to 60S ribosomal protein L35 hs
HU35KSUBA:W26839_AT Ribosomal protein L35 hs
HU35KSUBD:RC_H02255_AT Ribosomal protein L35 hs
U133_X3P:G13310411_3P_AT Similar to 60S ribosomal protein L35 hs
U133_X3P:HS.188882.0.A2_3P_AT Ribosomal protein L35 hs
HG-U95D:82336_AT Ribosomal protein L35 hs
HU35KSUBA:RC_AA215585_S_AT Ribosomal protein L35 hs
MOE430A:1454856_X_AT ribosomal protein L35 mm
MOUSE430A_2:1454856_X_AT ribosomal protein L35 mm
MOUSE430_2:1454856_X_AT ribosomal protein L35 mm
MOUSE430_2:1455950_X_AT ribosomal protein L35 mm
MOE430A:1455950_X_AT ribosomal protein L35 mm
MOUSE430A_2:1455950_X_AT ribosomal protein L35 mm
MOE430A:1434231_X_AT ribosomal protein L35 mm
MOUSE430A_2:1434231_X_AT ribosomal protein L35 mm
MOUSE430_2:1434231_X_AT ribosomal protein L35 mm
MOE430A:1454833_AT ribosomal protein L35 mm
MOUSE430A_2:1454833_AT ribosomal protein L35 mm
MOUSE430_2:1454833_AT ribosomal protein L35 mm
MOE430A:1436840_X_AT ribosomal protein L35 mm
MOUSE430A_2:1436840_X_AT ribosomal protein L35 mm
MOUSE430_2:1436840_X_AT ribosomal protein L35 mm
MOE430A:1416243_A_AT ribosomal protein L35 mm
MOUSE430A_2:1416243_A_AT ribosomal protein L35 mm
MOUSE430_2:1416243_A_AT ribosomal protein L35 mm
MG-U74AV2:93098_AT Ribosomal protein L35, mRNA (cDNA clone MGC:30987 IMAGE:5253556) mm
RG-U34A:M34331_G_AT ribosomal protein L35 rn
RG-U34A:M34331_AT ribosomal protein L35 rn
RAE230A:1388372_AT ribosomal protein L35 rn
RAT230_2:1388372_AT ribosomal protein L35 rn
RG-U34B:RC_AI030000_AT Ribosomal protein L35 rn
YEAST_2:1769743_S_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl35Bp and has similarity to rat L35 ribosomal protein Sc
YEAST_2:1769743_S_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl35Ap and has similarity to rat L35 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28216 Ribosomal protein, large subunit protein 35 [Caenorhabditis elegans] ref|NP_498702.1| Ribosomal Protein, Large subunit family member (rpl-35) [Caenorhabditis elegans] sp|P34662|RL35_CAEEL 60S ribosomal protein L35 5.0E-61
Protein Domains
Database ID Description E-Value
scop a.2.2.Ribosomal protein L29 (L29p) All alpha proteins; Long alpha-hairpin; Ribosomal protein L29 (L29p); Ribosomal protein L29 (L29p) 0.0270000007003546
scop a.2.2.Ribosomal protein L29 (L29p) All alpha proteins; Long alpha-hairpin; Ribosomal protein L29 (L29p); Ribosomal protein L29 (L29p) 0.230000004172325
Pfam IPR001854 EMBL-EBI Ribosomal protein L29 2.1E-20
Sequence
Target Sequence 
>C. ELEGANS:173351_S_AT
gaacatcgccagactcttgactgtcatcaaccagacccaaaagcaagagctccgcaagtt
ctacgctgaccacacagtacaagccaattgatcttcgcctcaagaagacccgcgcacatc
cgcagaagactgacctgctcacgagctttccctccgatctgccaagcacacaggctaagt
ctcgcaatcaagccgtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCGCCAGACTCTTGACTGTC 99 351 97 Antisense
ATCGCCAGACTCTTGACTGTCATCA 108 37 101 Antisense
GACTCTTGACTGTCATCAACCAGAC 171 373 108 Antisense
TTGACTGTCATCAACCAGACCCAAA 86 705 113 Antisense
AACCAGACCCAAAAGCAAGAGCTCC 634 145 125 Antisense
AAAAGCAAGAGCTCCGCAAGTTCTA 430 131 135 Antisense
GTACAAGCCAATTGATCTTCGCCTC 519 461 173 Antisense
GCCAATTGATCTTCGCCTCAAGAAG 469 277 179 Antisense
TGATCTTCGCCTCAAGAAGACCCGC 442 557 185 Antisense
ACAGGCTAAGTCTCGCAATCAAGCC 233 107 266 Antisense
TAAGTCTCGCAATCAAGCCGTCAGA 527 635 272 Antisense
Sequence Source Affymetrix Proprietary Database