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[173350_s_at]

Description AV184932_rc /REP_DB=TREMBL Accession /GB=AV184932 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 42      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 24      6grp_total > 31      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4079
1 2 3 4 range
A 2654
(0.3)
P 		4423.2
(3)
P 		3336.7
(1.3)
P 		505.9
(-3)
P 		3917
B 2472
(0.6)
P 		3938.3
(3)
P 		3568.4
(2.4)
P 		344.4
(-3)
P 		3594
C 2587.6
(0.7)
P 		3906.3
(3)
P 		3306.3
(2)
P 		418.9
(-3)
P 		3487
avr 2571.2
(0.5) 		4089.3
(3) 		3403.8
(1.9) 		423.1
(-3) 		3666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2685
1 2 3 4 5 6 range
A 2621.6
(0.5)
P 		2949.1
(1.4)
P 		3597.9
(3)
P 		3375.4
(2.4)
P 		3035.1
(1.6)
P 		1212.9
(-3)
P 		2385
B 3259
(1.2)
P 		3633.5
(2.2)
P 		3897.9
(3)
P 		3225
(1.1)
P 		3727.1
(2.5)
P 		1823.6
(-3)
P 		2074
C 2197.3
(-1.5)
P 		3673.7
(3)
P 		2851.4
(0.5)
P 		2966.8
(0.9)
P 		2523.2
(-0.5)
P 		1699.2
(-3)
P 		1975
avr 2692.6
(0.6) 		3418.8
(2.9) 		3449.1
(3) 		3189.1
(2.2) 		3095.1
(1.9) 		1578.6
(-3) 		1871
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1082
1 2 3 4 range
A 966.3
(3)
P 		960.2
(3)
P 		872.3
(2.4)
P 		74.1
(-3)
P 		892
B 788.3
(1.8)
P 		972.7
(3)
P 		826.9
(2)
P 		73.4
(-3)
P 		899
C 856.6
(1.4)
P 		1123.1
(2.8)
P 		1152.3
(3)
P 		70.6
(-3)
P 		1082
avr 870.4
(2.1) 		1018.7
(3) 		950.5
(2.6) 		72.7
(-3) 		946

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1219
1 2 3 4 5 6 range
A 483.3
(-1.5)
P 		1048.9
(3)
P 		783.5
(0.9)
P 		856.1
(1.5)
P 		915.9
(1.9)
P 		295.3
(-3)
P 		754
B 1134
(0.3)
P 		1209.4
(0.8)
P 		946.5
(-1.1)
P 		854.2
(-1.7)
P 		1514.3
(3)
P 		680
(-3)
P 		834
C 814.4
(-0.3)
P 		1121
(3)
P 		725.7
(-1.3)
P 		596.6
(-2.7)
P 		816.5
(-0.3)
P 		568.8
(-3)
P 		552
avr 810.6
(-0.1) 		1126.4
(3) 		818.6
(-0) 		769
(-0.5) 		1082.2
(2.6) 		514.7
(-3) 		612
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173350_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27739
Sequence Type Exemplar sequence
Representative Public ID AV184932 NCBI
Target Description AV184932_rc /REP_DB=TREMBL Accession /GB=AV184932 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027927(11), NM_001027928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027927 NCBI Caenorhabditis elegans C54E4.2a (C54E4.2) mRNA, complete cds. 11/11 None
NM_001027928 NCBI Caenorhabditis elegans C54E4.2b (C54E4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038610 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2142117:2146319:1 11/11 None
C54E4.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2136954:2146319:1 gene:C54E4.2 11/11 None
C54E4.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2136956:2146319:1 gene:C54E4.2 11/11 None
C54E4.2b ENSEMBL cdna:known chromosome:CEL140:IV:2136961:2146396:1 gene:C54E4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2144304-2146400(+) 96.17 96.17
Public Domain and Genome References
Ensembl C54E4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO61425 Hypothetical protein C54E4.2b [Caenorhabditis elegans] ref|NP_001023099.1| C54E4.2b [Caenorhabditis elegans] 1.0E-141
blast AAK29794 Hypothetical protein C54E4.2a [Caenorhabditis elegans] ref|NP_001023098.1| C54E4.2a [Caenorhabditis elegans] 1.0E-137
blast AAO61425 Hypothetical protein C54E4.2b [Caenorhabditis elegans] ref|NP_001023099.1| C54E4.2b [Caenorhabditis elegans] 1.0E-135
blast AAK29794 Hypothetical protein C54E4.2a [Caenorhabditis elegans] ref|NP_001023098.1| C54E4.2a [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.029
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 8.5E-14
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 8.5E-14
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 8.5E-14
Sequence
Target Sequence 
>C. ELEGANS:173350_S_AT
tgatccacaccttcttggagtcttcttgccacgttgcgaccttgagggattctacaagcc
agaacaatgtcacgatggaaactgctggtgtgtggaccgttatggacgggaattcgacaa
atctcgagttcagaacactcttccagactgtggacaatacgcatccgatatgaccgaaga
agacatcgcattcctcagagagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCACACCTTCTTGGAGTCTTC 141 567 33 Antisense
GCCACGTTGCGACCTTGAGGGATTC 543 279 60 Antisense
TCTACAAGCCAGAACAATGTCACGA 316 611 83 Antisense
CAATGTCACGATGGAAACTGCTGGT 481 183 97 Antisense
AACTGCTGGTGTGTGGACCGTTATG 535 139 112 Antisense
ATGGACGGGAATTCGACAAATCTCG 629 51 134 Antisense
AATCTCGAGTTCAGAACACTCTTCC 87 171 152 Antisense
GAACACTCTTCCAGACTGTGGACAA 134 351 165 Antisense
GGACAATACGCATCCGATATGACCG 615 525 184 Antisense
GACCGAAGAAGACATCGCATTCCTC 183 383 204 Antisense
AGACATCGCATTCCTCAGAGAGAGA 349 71 213 Antisense
Sequence Source Affymetrix Proprietary Database