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[173349_at]

Description CEK045EYR_rc /REP_DB=TREMBL Accession /GB=D34404 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk45e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 29      6grp_total > 43      4grp_total > 17      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8078
1 2 3 4 range
A 13417.6
(-2.5)
P 		12918.3
(-3)
P 		14580
(-1.3)
P 		18722.5
(3)
P 		5804
B 13130.2
(-3)
P 		14161.1
(-0.7)
P 		14444.4
(-0.1)
P 		15805.2
(3)
P 		2675
C 12539
(-3)
P 		15773.2
(-0.6)
P 		13172.8
(-2.5)
P 		20617
(3)
P 		8078
avr 13028.9
(-3) 		14284.2
(-1.6) 		14065.7
(-1.8) 		18381.6
(3) 		5353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4679
1 2 3 4 5 6 range
A 13962.4
(0.2)
P 		12467.1
(-2.1)
P 		15864.6
(3)
P 		11837.7
(-3)
P 		13003.3
(-1.3)
P 		11846.8
(-3)
P 		4027
B 14176.2
(3)
P 		11185.5
(-3)
P 		13262
(1.2)
P 		12797.8
(0.2)
P 		11731.9
(-1.9)
P 		11307.5
(-2.8)
P 		2991
C 13424.5
(1.4)
P 		11813.8
(-3)
P 		12059.2
(-2.3)
P 		12575.9
(-0.9)
P 		13425.1
(1.4)
P 		14033.1
(3)
P 		2219
avr 13854.4
(3) 		11822.1
(-3) 		13728.6
(2.6) 		12403.8
(-1.3) 		12720.1
(-0.3) 		12395.8
(-1.3) 		2032
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2145
1 2 3 4 range
A 4885.3
(3)
P 		2804.2
(-2.8)
P 		3811.5
(-0)
P 		2740.6
(-3)
P 		2145
B 4187.1
(3)
P 		3497.5
(-1.9)
P 		3347.1
(-3)
P 		3368.1
(-2.9)
P 		840
C 4150.8
(0.6)
P 		4534.9
(2.7)
P 		4591.1
(3)
P 		3476.3
(-3)
P 		1115
avr 4407.7
(3) 		3612.2
(-0.9) 		3916.6
(0.6) 		3195
(-3) 		1213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2447
1 2 3 4 5 6 range
A 2573.9
(-3)
P 		4433.9
(3)
P 		3455
(-0.2)
P 		3002.3
(-1.6)
P 		3923.8
(1.4)
P 		2884.3
(-2)
P 		1860
B 4932.6
(3)
P 		3723.2
(-1.2)
P 		3220.4
(-3)
P 		3389.7
(-2.4)
P 		4766.5
(2.4)
P 		4216.5
(0.5)
P 		1712
C 4975.9
(3)
P 		3604.8
(-0.4)
P 		3069.3
(-1.7)
P 		2529
(-3)
P 		4344.2
(1.5)
P 		4697.7
(2.3)
P 		2447
avr 4160.8
(2.2) 		3920.6
(1.1) 		3248.2
(-1.8) 		2973.7
(-3) 		4344.8
(3) 		3932.8
(1.2) 		1371
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27598
Sequence Type Exemplar sequence
Representative Public ID CEK045EYR NCBI
Target Description CEK045EYR_rc /REP_DB=TREMBL Accession /GB=D34404 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk45e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK045EYR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK045EYR CEK045EYR_rc /REP_DB=TREMBL Accession /GB=D34404 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk45e11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:8901-9410(+) 97.64 97.64
Sequence
Target Sequence 
>C. ELEGANS:173349_AT
ggggtgacaggtgttgtattatctaagtcaagattggatattattttacatgatacttat
tatgtagttaaacattttcttttgttttaaagtttaggagctgtgggggggattttcacg
ggtgttacactatgatgaagatttattacagggtatgtgttagataaacttatgatatct
gcagtatttattttattatttattggggtaaatttaacatttttcccgctacattttgca
ggactacacgggttcccacgtaaatatttagattaccctgatgtttattcggtatgaaat
attattgcctcttatggttctattattagaactgcaggactattcntacttatttangta
tnntangagtctttctttagttatcgtttagtaattagagattattattctaatagaaga
cctgagtattgtatgagta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTGACAGGTGTTGTATTATCTA 646 497 30 Antisense
GGAGCTGTGGGGGGGATTTTCACGG 413 515 126 Antisense
GGATTTTCACGGGTGTTACACTATG 671 507 139 Antisense
AACATTTTTCCCGCTACATTTTGCA 678 121 245 Antisense
CCCGCTACATTTTGCAGGACTACAC 545 259 254 Antisense
TTTGCAGGACTACACGGGTTCCCAC 261 593 264 Antisense
TTTAGATTACCCTGATGTTTATTCG 234 673 296 Antisense
GAAATATTATTGCCTCTTATGGTTC 412 363 325 Antisense
TTGCCTCTTATGGTTCTATTATTAG 379 701 334 Antisense
GAGTCTTTCTTTAGTTATCGTTTAG 683 399 396 Antisense
AGAAGACCTGAGTATTGTATGAGTA 601 73 444 Antisense
Sequence Source Affymetrix Proprietary Database