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[173348_s_at]

Description CEK055BYR_rc /REP_DB=TREMBL Accession /GB=D65344 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk55b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      6grp_highest_nonorm > 72      6grp_total > 71      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 563
1 2 3 4 range
A 134.3
(-1.2)
P 		285.3
(1)
P 		423.9
(3)
P 		11.5
(-3)
A 		412
B 105.2
(-1.9)
P 		239.9
(-0.5)
P 		565.5
(3)
P 		2.3
(-3)
A 		563
C 76.4
(-2.5)
P 		339.5
(0.5)
P 		554.9
(3)
P 		36.6
(-3)
A 		518
avr 105.3
(-1.9) 		288.2
(0.3) 		514.8
(3) 		16.8
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 110.2
(-3)
P 		281.1
(-1.2)
P 		439.8
(0.5)
P 		682
(3)
P 		356.2
(-0.4)
P 		170.6
(-2.4)
P 		572
B 175.3
(-3)
P 		348.5
(-0.5)
P 		516.8
(1.9)
P 		593.5
(3)
P 		446.6
(0.9)
P 		317.5
(-1)
P 		418
C 123
(-3)
P 		323.3
(-0.9)
P 		236.7
(-1.8)
P 		702.3
(3)
P 		520.9
(1.1)
P 		274.7
(-1.4)
P 		579
avr 136.2
(-3) 		317.6
(-0.9) 		397.8
(0) 		659.3
(3) 		441.2
(0.5) 		254.3
(-1.6) 		523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 48.9
(-0.4)
P 		61.9
(0.3)
P 		110.8
(3)
P 		1.7
(-3)
A 		109
B 33.5
(-1.5)
P 		59.2
(-0.3)
P 		131
(3)
P 		0.5
(-3)
A 		131
C 25.3
(-2.4)
P 		97.6
(-0.1)
P 		193.4
(3)
P 		6.2
(-3)
A 		187
avr 35.9
(-1.6) 		72.9
(-0) 		145.1
(3) 		2.8
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 20.3
(-3)
P 		100
(0.1)
P 		95.8
(-0)
P 		173
(3)
P 		107.5
(0.4)
P 		41.5
(-2.2)
P 		153
B 61
(-3)
P 		116
(-0.3)
P 		125.5
(0.2)
P 		157.2
(1.8)
P 		181.4
(3)
P 		118.4
(-0.1)
P 		120
C 45.6
(-3)
P 		98.7
(-0.4)
P 		60.2
(-2.3)
P 		141.2
(1.7)
P 		168.5
(3)
P 		92
(-0.7)
P 		123
avr 42.3
(-3) 		104.9
(0.3) 		93.8
(-0.3) 		157.1
(3) 		152.5
(2.8) 		84
(-0.8) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173348_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27690
Sequence Type Exemplar sequence
Representative Public ID CEK055BYR NCBI
Target Description CEK055BYR_rc /REP_DB=TREMBL Accession /GB=D65344 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk55b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067888 NCBI Caenorhabditis elegans Y67D8C.8 (Y67D8C.8) mRNA, complete cds. 11/11 None
SNAP00000001614 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3067999:3069797:-1 10/11 None
Y67D8C.8 ENSEMBL cdna:known chromosome:CEL140:IV:3067885:3069831:-1 gene:Y67D8C.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001625 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3067944-3069808(-) 86.9 86.9
Public Domain and Genome References
Gene Title
Ensembl Y67D8C.8
Entrez Gene 177087 Entrez gene
SwissProt Q95XP7 EMBL-EBI
WormBase CE27506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68552 Hypothetical protein Y67D8C.8 [Caenorhabditis elegans] ref|NP_500289.1| Y67D8C.8 [Caenorhabditis elegans] 1.0E-31
blast CAE59885 Hypothetical protein CBG03365 [Caenorhabditis briggsae] 8.0E-19
Sequence
Target Sequence 
>C. ELEGANS:173348_S_AT
tattttgttctttggagcagcatttggagctgatttggaaggacccggctcaggagatgt
ttcaactgatgctaaggaagccattttaaatgctcagacccctttggatgcagtctcatc
agatggaagcggcgccgatgttgaagcatccggggaagacgtccagactttcttcttctn
nnnnntcagattttatcaattttcgatcactgccgttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTGTTCTTTGGAGCAGCATTT 316 663 47 Antisense
GTTCTTTGGAGCAGCATTTGGAGCT 363 441 53 Antisense
GGAGATGTTTCAACTGATGCTAAGG 252 519 99 Antisense
GATGCTAAGGAAGCCATTTTAAATG 568 397 114 Antisense
GAAGCCATTTTAAATGCTCAGACCC 634 343 123 Antisense
TCTCATCAGATGGAAGCGGCGCCGA 450 607 160 Antisense
GAAGCGGCGCCGATGTTGAAGCATC 433 343 172 Antisense
GCGCCGATGTTGAAGCATCCGGGGA 110 287 178 Antisense
CATCCGGGGAAGACGTCCAGACTTT 130 211 193 Antisense
GAAGACGTCCAGACTTTCTTCTTCT 551 339 201 Antisense
TATCAATTTTCGATCACTGCCGTTT 68 661 240 Antisense
Sequence Source Affymetrix Proprietary Database