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[173347_at]

Description CEK104C1R_rc /REP_DB=TREMBL Accession /GB=D72521 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk104c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 27      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 21      6grp_total > 17      4grp_total > 57      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1371
1 2 3 4 range
A 1695.2
(-0.4)
P 		2160.7
(2.1)
P 		2319.6
(3)
P 		1232.6
(-3)
P 		1087
B 1254.7
(-2.8)
P 		2091.2
(2.2)
P 		2228.7
(3)
P 		1216.7
(-3)
P 		1012
C 1564.4
(-1)
P 		2123.7
(1.5)
P 		2470.8
(3)
P 		1099.5
(-3)
P 		1371
avr 1504.8
(-1.3) 		2125.2
(1.9) 		2339.7
(3) 		1182.9
(-3) 		1157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1055
1 2 3 4 5 6 range
A 1563.8
(3)
P 		1517.4
(2.6)
P 		1106.1
(-0.9)
P 		1019.6
(-1.6)
P 		853.5
(-3)
P 		1077.1
(-1.1)
P 		710
B 1464.6
(2.8)
P 		1227.6
(-0.9)
P 		1475.7
(3)
P 		1096.6
(-3)
P 		1155.8
(-2.1)
P 		1116.8
(-2.7)
P 		379
C 1908.1
(3)
P 		1227.5
(-1)
P 		1260.9
(-0.8)
P 		897.5
(-3)
P 		1089.6
(-1.9)
P 		1081.3
(-1.9)
P 		1011
avr 1645.5
(3) 		1324.2
(-0) 		1280.9
(-0.4) 		1004.6
(-3) 		1033
(-2.7) 		1091.7
(-2.2) 		641
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 681
1 2 3 4 range
A 617.2
(3)
P 		469
(1)
P 		606.4
(2.9)
P 		180.4
(-3)
P 		437
B 400.1
(0.3)
P 		516.5
(3)
P 		516.4
(3)
P 		259.3
(-3)
P 		257
C 517.9
(-0)
P 		610.6
(0.8)
P 		861.2
(3)
P 		185.4
(-3)
P 		676
avr 511.7
(1) 		532
(1.3) 		661.3
(3) 		208.4
(-3) 		453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 527
1 2 3 4 5 6 range
A 288.3
(-2)
P 		539.7
(3)
P 		240.9
(-3)
P 		258.6
(-2.6)
P 		257.5
(-2.7)
P 		262.2
(-2.6)
P 		299
B 509.6
(3)
P 		408.6
(0.2)
P 		358.3
(-1.1)
P 		290.5
(-3)
P 		469.6
(1.9)
P 		416.4
(0.4)
P 		219
C 707.3
(3)
P 		374.6
(-0.8)
P 		320.9
(-1.4)
P 		180.5
(-3)
P 		352.6
(-1)
P 		362
(-0.9)
P 		527
avr 501.7
(3) 		441
(1.6) 		306.7
(-1.5) 		243.2
(-3) 		359.9
(-0.3) 		346.9
(-0.6) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27926
Sequence Type Exemplar sequence
Representative Public ID CEK104C1R NCBI
Target Description CEK104C1R_rc /REP_DB=TREMBL Accession /GB=D72521 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk104c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058528(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058528 NCBI Caenorhabditis elegans mitochondrial ProHiBitin complex family member (phb-1) (phb-1) mRNA, complete cds. 10/11 None
Y37E3.9 ENSEMBL cdna:known chromosome:CEL140:I:2071354:2072551:1 gene:Y37E3.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001191 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001206 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2072168-2072537(+) 90.24 90.24
Public Domain and Genome References
Gene Title
Gene Symbol phb-1
Ensembl Y37E3.9
Entrez Gene 171768 Entrez gene
SwissProt Q9BKU4 EMBL-EBI
WormBase CE26775 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249344_AT prohibitin at
CANINE_2:CFA.4315.1.S1_AT similar to prohibitin cfa
CANINE_2:CFAAFFX.7438.1.S1_AT similar to prohibitin cfa
DROSOPHILA_2:1630771_S_AT lethal (2) 37Cc dm
DROSGENOME1:152440_AT lethal (2) 37Cc dm
CHICKEN:GGA.5534.1.S1_AT prohibitin gga
HG-U133_PLUS_2:200658_S_AT prohibitin hs
HG-U133A_2:200658_S_AT prohibitin hs
HG-FOCUS:200658_S_AT prohibitin hs
HG-U133A:200658_S_AT prohibitin hs
HG-U133_PLUS_2:200659_S_AT prohibitin hs
HG-U133A:200659_S_AT prohibitin hs
HG-U133A_2:200659_S_AT prohibitin hs
HU35KSUBC:RC_AA055656_AT prohibitin hs
HUGENEFL:S85655_AT prohibitin hs
U133_X3P:G6031190_3P_A_AT prohibitin hs
U133_X3P:HS.75323.0.A1_3P_A_AT prohibitin hs
HG-U95AV2:36592_AT prohibitin hs
HG-U95E:80405_F_AT prohibitin hs
MU11KSUBB:X78682_S_AT prohibitin mm
MU11KSUBB:MSA.24245.0_F_AT prohibitin mm
MU11KSUBB:MSA.9002.0_S_AT prohibitin mm
MG-U74AV2:94855_AT prohibitin mm
MOE430A:1417053_AT prohibitin mm
MOUSE430A_2:1417053_AT prohibitin mm
MOUSE430_2:1417053_AT prohibitin mm
MOE430A:1448563_AT prohibitin mm
MOUSE430A_2:1448563_AT prohibitin mm
MOUSE430_2:1448563_AT prohibitin mm
MU19KSUBA:TC14227_I_AT Prohibitin (Phb), mRNA mm
MU19KSUBB:TC27019_AT Prohibitin (Phb), mRNA mm
MU19KSUBC:TC37061_AT Prohibitin (Phb), mRNA mm
RG-U34A:M61219_S_AT prohibitin rn
RG-U34A:M61219_R_AT prohibitin rn
RG-U34A:RC_AI169631_S_AT prohibitin rn
RAE230A:1367927_AT prohibitin rn
RAT230_2:1367927_AT prohibitin rn
RAE230A:1367926_AT prohibitin rn
RAT230_2:1367926_AT prohibitin rn
YEAST_2:1778425_AT Subunit of the prohibitin complex (Phb1p-Phb2p), a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation Sc
Protein Similarities
Method ID Description E-Value
blast NP_490929 mitochondrial ProHiBitin complex family member (phb-1) [Caenorhabditis elegans] gb|AAK27865.1| Mitochondrial prohibitin complex protein 1 [Caenorhabditis elegans] sp|Q9BKU4|PHB1_CAEEL Mitochondrial prohibitin complex protein 1 (Prohibitin-1) 1.0E-127
blast CAE74329 Hypothetical protein CBG22042 [Caenorhabditis briggsae] 1.0E-121
blast AAB53231 prohibitin-like molecule TC-PRO-1 [Toxocara canis] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 1.8E-60
Sequence
Target Sequence 
>C. ELEGANS:173347_AT
tctgccggagacggacttgtcgagctcagaaagattgaggccgccgaagagatcgccgag
cgtatggccaagaacaagaatgtcacctattttccaggaaaccaacaaacccttctcaac
cttcaatcctaaatatctccggttacgtgttttagacgaattccantcattttccccttt
tcaaagagccnnnnncactctgttgaactttcgagaataatcatgcccgaattctcaatt
aaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagtggtcatttccttcattca
ttttgtgtaggtatcgta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCGGAGACGGACTTGTCGAGC 489 609 13 Antisense
GACGGACTTGTCGAGCTCAGAAAGA 201 377 22 Antisense
TTGAGGCCGCCGAAGAGATCGCCGA 518 705 47 Antisense
GAGATCGCCGAGCGTATGGCCAAGA 215 397 61 Antisense
GAATGTCACCTATTTTCCAGGAAAC 460 331 90 Antisense
CAACCTTCAATCCTAAATATCTCCG 279 187 129 Antisense
TATCTCCGGTTACGTGTTTTAGACG 708 653 146 Antisense
CACTCTGTTGAACTTTCGAGAATAA 4 197 208 Antisense
AATAATCATGCCCGAATTCTCAATT 573 171 228 Antisense
GAGTGGTCATTTCCTTCATTCATTT 687 401 291 Antisense
TCATTCATTTTGTGTAGGTATCGTA 45 619 306 Antisense
Sequence Source Affymetrix Proprietary Database