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[173344_at]

Description CEK030GXR_rc /REP_DB=TREMBL Accession /GB=D33424 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk30g10 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1.3
(-3)
A 		15.6
(-1.1)
A 		6
(-2.4)
A 		45.6
(3)
A 		44
B 1.2
(-1.8)
A 		1.4
(0.6)
A 		1.1
(-3)
A 		1.6
(3)
A 		1
C 2.1
(-3)
A 		4
(-2.7)
A 		22.4
(0.5)
A 		37.3
(3)
A 		35
avr 1.5
(-3) 		7
(-1.8) 		9.8
(-1.1) 		28.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		5.2
(-2.8)
A 		3.7
(-2.9)
A 		2.9
(-3)
A 		46.4
(0.2)
A 		85
(3)
P 		82
B 2
(-2.9)
A 		17
(-1.7)
A 		1.4
(-3)
A 		1.9
(-3)
A 		38.4
(0.1)
A 		72.9
(3)
P 		72
C 5.1
(-2.8)
A 		2.5
(-3)
A 		9.8
(-2.3)
A 		14.2
(-1.9)
A 		29.3
(-0.5)
P 		66.1
(3)
P 		64
avr 3.7
(-3) 		8.2
(-2.6) 		5
(-2.9) 		6.3
(-2.8) 		38
(-0.1) 		74.7
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-3)
A 		3.4
(-0.2)
A 		1.6
(-1.9)
A 		6.7
(3)
A 		6
B 0.4
(3)
A 		0.3
(-0)
A 		0.2
(-3)
A 		0.3
(-0)
A 		0
C 0.7
(-3)
A 		1.2
(-2.6)
A 		7.8
(3)
A 		6.3
(1.7)
A 		7
avr 0.5
(-3) 		1.6
(-1.3) 		3.2
(1.2) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.9
(-2.6)
A 		0.8
(-3)
A 		0.7
(-3)
A 		14
(1)
A 		20.7
(3)
P 		20
B 0.7
(-2.9)
A 		5.7
(-1.8)
A 		0.4
(-3)
A 		0.5
(-3)
A 		15.6
(0.4)
A 		27.2
(3)
P 		27
C 1.9
(-2.7)
A 		0.8
(-3)
A 		2.5
(-2.5)
A 		2.9
(-2.4)
A 		9.5
(-0.5)
P 		22.1
(3)
P 		21
avr 1.1
(-3) 		2.8
(-2.5) 		1.2
(-3) 		1.4
(-2.9) 		13
(0.2) 		23.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27917
Sequence Type Exemplar sequence
Representative Public ID CEK030GXR NCBI
Target Description CEK030GXR_rc /REP_DB=TREMBL Accession /GB=D33424 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk30g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065131 NCBI Caenorhabditis elegans Y54F10BM.3 (Y54F10BM.3) mRNA, complete cds. 11/11 None
Y54F10BM.3 ENSEMBL cdna:known chromosome:CEL140:III:2277266:2289954:1 gene:Y54F10BM.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027499 7/11 Cross Hyb Matching Probes None
SNAP00000027485 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2289011-2289946(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54F10BM.3
Entrez Gene 175350 Entrez gene
SwissProt Q95XL1 EMBL-EBI
WormBase CE27012 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68894 Hypothetical protein Y54F10BM.3 [Caenorhabditis elegans] ref|NP_497532.1| Y54F10BM.3 [Caenorhabditis elegans] 0.0
blast AAB37811 Hypothetical protein F55F8.7 [Caenorhabditis elegans] ref|NP_491657.1| F55F8.7 [Caenorhabditis elegans] 4.0E-16
blast AAD34661 Hypothetical protein F20H11.4 [Caenorhabditis elegans] ref|NP_498458.1| F20H11.4 [Caenorhabditis elegans] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.8E-39
Sequence
Target Sequence 
>C. ELEGANS:173344_AT
aactgacaaagcagcgcgcgacactctcgcaataaccgaccaacaaatgtgtggacaaac
ggtatcattcaaaggagttcccgggcnnnnngttcgcattttgatgaggtccatcaatgc
ggagcaggaaatgctggaggaacagaagacacaggaggctactgataaaagtgtgaagca
gcgcaaagtcggaaatgcgaagaaaaccggtgggcattgaaactcgaatctcgatatggc
aacttcgatc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGACAAAGCAGCGCGCGACACT 343 141 61 Antisense
CACTCTCGCAATAACCGACCAACAA 19 199 82 Antisense
AACCGACCAACAAATGTGTGGACAA 31 147 94 Antisense
GGTATCATTCAAAGGAGTTCCCGGG 228 505 121 Antisense
GTTCGCATTTTGATGAGGTCCATCA 129 443 152 Antisense
GAGGTCCATCAATGCGGAGCAGGAA 346 403 166 Antisense
GGAACAGAAGACACAGGAGGCTACT 312 527 199 Antisense
GTGTGAAGCAGCGCAAAGTCGGAAA 14 489 231 Antisense
GCGAAGAAAACCGGTGGGCATTGAA 95 287 257 Antisense
GTGGGCATTGAAACTCGAATCTCGA 322 489 270 Antisense
GAATCTCGATATGGCAACTTCGATC 322 329 286 Antisense
Sequence Source Affymetrix Proprietary Database