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[173342_at]

Description CEK114AXR_rc /REP_DB=TREMBL Accession /GB=D73095 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk114a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 96      6grp_total > 77      4grp_total > 41      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 552
1 2 3 4 range
A 558
(-3)
P 		1110
(3)
P 		887.3
(0.6)
P 		767.1
(-0.7)
P 		552
B 606.6
(-3)
P 		853.7
(0.8)
P 		994.6
(3)
P 		748.5
(-0.8)
P 		388
C 664.9
(-3)
P 		903.6
(2.1)
P 		943.4
(3)
P 		782.1
(-0.5)
P 		279
avr 609.8
(-3) 		955.8
(3) 		941.8
(2.8) 		765.9
(-0.3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 702
1 2 3 4 5 6 range
A 726.5
(-2.3)
P 		698.7
(-2.7)
P 		804.8
(-1.3)
P 		673.5
(-3)
P 		715
(-2.4)
P 		1124.9
(3)
P 		451
B 597
(-2.9)
P 		582.6
(-3)
P 		849.8
(-0.3)
P 		638
(-2.4)
P 		792.2
(-0.9)
P 		1185.7
(3)
P 		603
C 637.4
(-3)
P 		677.6
(-2.6)
P 		884.8
(-0.7)
P 		726.1
(-2.2)
P 		782.6
(-1.7)
P 		1284.8
(3)
P 		647
avr 653.6
(-3) 		653
(-3) 		846.5
(-0.9) 		679.2
(-2.7) 		763.3
(-1.8) 		1198.5
(3) 		546
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 203.2
(1.2)
P 		241
(3)
P 		232
(2.6)
P 		112.3
(-3)
P 		129
B 193.4
(-0.1)
P 		210.9
(1.3)
P 		230.5
(3)
P 		159.5
(-3)
P 		71
C 220.1
(-0.3)
P 		259.8
(0.9)
P 		328.8
(3)
P 		131.9
(-3)
P 		197
avr 205.6
(0.3) 		237.2
(1.8) 		263.8
(3) 		134.6
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 133.9
(-3)
P 		248.5
(1.9)
P 		175.3
(-1.2)
P 		170.8
(-1.4)
P 		215.7
(0.5)
P 		273.9
(3)
P 		140
B 207.7
(-2.1)
P 		193.9
(-2.5)
P 		206.4
(-2.2)
P 		169
(-3)
P 		321.9
(0.4)
P 		442.1
(3)
P 		273
C 236.2
(-1.1)
P 		206.8
(-1.7)
P 		225.2
(-1.3)
P 		146
(-3)
P 		253.2
(-0.7)
P 		430.1
(3)
P 		284
avr 192.6
(-2.2) 		216.4
(-1.5) 		202.3
(-1.9) 		161.9
(-3) 		263.6
(-0.2) 		382
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27776
Sequence Type Exemplar sequence
Representative Public ID CEK114AXR NCBI
Target Description CEK114AXR_rc /REP_DB=TREMBL Accession /GB=D73095 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk114a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058450(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058450 NCBI Caenorhabditis elegans Y92H12BR.2 (Y92H12BR.2) mRNA, complete cds. 10/11 None
SNAP00000015742 ENSEMBL cdna:SNAP chromosome:CEL140:I:1414069:1415794:-1 9/11 None
GENEFINDER00000015750 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1414069:1415794:-1 9/11 None
Y92H12BR.2 ENSEMBL cdna:known chromosome:CEL140:I:1413948:1415809:-1 gene:Y92H12BR.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1413969-1414245(-) 81.85 81.85
Public Domain and Genome References
Gene Title
Ensembl Y92H12BR.2
Entrez Gene 171706 Entrez gene
SwissProt Q9BPN9 EMBL-EBI
WormBase CE26782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK09077 Hypothetical protein Y92H12BR.2 [Caenorhabditis elegans] ref|NP_490851.1| Y92H12BR.2 [Caenorhabditis elegans] 1.0E-100
blast CAE69078 Hypothetical protein CBG15096 [Caenorhabditis briggsae] 3.0E-43
Sequence
Target Sequence 
>C. ELEGANS:173342_AT
agaagccaccagatgcagaataactttnnnnnnccgttcagacaaaacttcaatcatcag
aaccgtaagatgttccccggcaacaacaatcgctttcagcatccgaagcagaaacaattc
ccgacgatgccagcgnnnnnntcggtcgccgagctggatcgagagctcgatgattacatg
agaaagccgaagcacgcgccgatcacaatttaatttaatcatctgtattattattatcat
tctgaactccac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCACCAGATGCAGAATAACT 117 75 15 Antisense
AACTTCAATCATCAGAACCGTAAGA 376 139 60 Antisense
CAGAACCGTAAGATGTTCCCCGGCA 671 71 72 Antisense
TAAGATGTTCCCCGGCAACAACAAT 564 635 80 Antisense
GGCAACAACAATCGCTTTCAGCATC 243 535 93 Antisense
AATCGCTTTCAGCATCCGAAGCAGA 582 167 102 Antisense
AGAAACAATTCCCGACGATGCCAGC 288 73 124 Antisense
TCGAGAGCTCGATGATTACATGAGA 77 601 173 Antisense
CATGAGAAAGCCGAAGCACGCGCCG 296 209 191 Antisense
AAGCACGCGCCGATCACAATTTAAT 342 151 204 Antisense
TTATTATTATCATTCTGAACTCCAC 492 679 242 Antisense
Sequence Source Affymetrix Proprietary Database