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[173340_at]

Description C59804 /REP_DB=TREMBL Accession /GB=C59804 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk443a10 : 3prime end, single read.
Cluster 6grp_total > 70      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 43
(-0.9)
A 		22.3
(-3)
A 		27.9
(-2.4)
A 		80.9
(3)
A 		59
B 44.1
(3)
A 		9.8
(-2.5)
A 		7
(-3)
A 		7.9
(-2.9)
A 		37
C 2.8
(-3)
A 		29
(3)
A 		12.7
(-0.7)
A 		14.3
(-0.4)
A 		26
avr 30
(1.6) 		20.4
(-1.5) 		15.9
(-3) 		34.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 8.4
(-2.6)
A 		5.8
(-3)
A 		8.6
(-2.6)
A 		50
(3)
A 		9
(-2.6)
A 		45.9
(2.4)
A 		44
B 9.7
(-2.3)
A 		21
(-0.5)
A 		38
(2.2)
A 		43.1
(3)
A 		8.5
(-2.4)
A 		5
(-3)
A 		38
C 4.5
(-2.5)
A 		11.9
(3)
A 		4.9
(-2.2)
A 		7.2
(-0.5)
A 		3.8
(-3)
A 		11.9
(3)
A 		8
avr 7.5
(-2.9) 		12.9
(-1.7) 		17.2
(-0.7) 		33.4
(3) 		7.1
(-3) 		20.9
(0.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		4.8
(-3)
A 		7.3
(-1.6)
A 		11.8
(0.9)
A 		11
B 14.1
(3)
A 		2.4
(-2.6)
A 		1.6
(-3)
A 		1.7
(-3)
A 		13
C 0.9
(-3)
A 		8.3
(3)
A 		4.4
(-0.2)
A 		2.4
(-1.8)
A 		7
avr 10.2
(3) 		5.2
(-2.2) 		4.4
(-3) 		5.3
(-2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.6
(-3)
A 		2.1
(-2.7)
A 		1.9
(-2.8)
A 		12.7
(3)
A 		2.7
(-2.4)
A 		11.2
(2.2)
A 		11
B 3.4
(-2.1)
A 		7
(0.2)
A 		9.2
(1.6)
A 		11.4
(3)
A 		3.5
(-2)
A 		1.9
(-3)
A 		10
C 1.7
(-1.9)
A 		3.6
(2.1)
A 		1.2
(-3)
A 		1.4
(-2.6)
A 		1.2
(-3)
A 		4
(3)
A 		3
avr 2.2
(-3) 		4.2
(-1.1) 		4.1
(-1.2) 		8.5
(3) 		2.5
(-2.7) 		5.7
(0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27595
Sequence Type Exemplar sequence
Representative Public ID C59804 NCBI
Target Description C59804 /REP_DB=TREMBL Accession /GB=C59804 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk443a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59804
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59804 C59804 /REP_DB=TREMBL Accession /GB=C59804 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk443a10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1121566-1121920(+) 82.9 82.9
Sequence
Target Sequence 
>C. ELEGANS:173340_AT
ggccgctggtggagcatcattggcggctccccaagttggagcagcagttggagcacctcc
ccaggttggtggagcagctggagcagctccccatgatgttgatggagcagctggagcagc
tccccatgatgttgatggagcagtattctcggattgccagaggtcaacgagtggctggga
ggctgacattggtggggactgagcagctactggttgttggctggacgaaggcgttggcgt
tgttgttgtagccagttggtggggattgagcagcattgttgttgtaggatgggttctgag
ctgctcctcaatttgtatacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCGCTGGTGGAGCATCATTGGCG 15 543 70 Antisense
GGCGGCTCCCCAAGTTGGAGCAGCA 125 541 91 Antisense
CACCTCCCCAGGTTGGTGGAGCAGC 78 201 123 Antisense
GGAGCAGTATTCTCGGATTGCCAGA 110 521 206 Antisense
GAGGTCAACGAGTGGCTGGGAGGCT 228 401 229 Antisense
GGAGGCTGACATTGGTGGGGACTGA 384 515 247 Antisense
GGGGACTGAGCAGCTACTGGTTGTT 265 497 263 Antisense
GGCTGGACGAAGGCGTTGGCGTTGT 252 541 288 Antisense
GCGTTGTTGTTGTAGCCAGTTGGTG 431 291 306 Antisense
TAGGATGGGTTCTGAGCTGCTCCTC 437 653 354 Antisense
GAGCTGCTCCTCAATTTGTATACGT 506 387 367 Antisense
Sequence Source Affymetrix Proprietary Database