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[173339_at]

Description CEC3943_rc /REP_DB=TREMBL Accession /GB=C10394 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk145d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 42      6grp_total > 22      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 623
(-1.2)
P 		723.7
(0.9)
P 		826.2
(3)
P 		538.4
(-3)
P 		288
B 710
(1.7)
P 		780.5
(3)
P 		634.6
(0.2)
P 		462.7
(-3)
P 		318
C 567.3
(-0.4)
P 		626
(3)
P 		521.9
(-3)
P 		602.1
(1.6)
P 		104
avr 633.4
(0.4) 		710.1
(3) 		660.9
(1.3) 		534.4
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1444
1 2 3 4 5 6 range
A 1564.2
(3)
P 		257.6
(-2.7)
P 		1368
(2.1)
P 		191.4
(-3)
P 		1281.2
(1.8)
P 		183.3
(-3)
P 		1381
B 1236.2
(2.2)
P 		1167.2
(1.8)
P 		1393.5
(3)
P 		877.4
(0.4)
P 		627.7
(-0.9)
P 		223.9
(-3)
P 		1170
C 120
(-3)
P 		1530.7
(3)
P 		282.8
(-2.3)
P 		781.9
(-0.2)
P 		251.2
(-2.4)
P 		142.4
(-2.9)
P 		1411
avr 973.5
(2.7) 		985.2
(2.8) 		1014.8
(3) 		616.9
(0.1) 		720
(0.9) 		183.2
(-3) 		832
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 226.8
(3)
P 		157.1
(0.2)
P 		216
(2.6)
P 		78.8
(-3)
P 		148
B 226.4
(3)
P 		192.8
(1.4)
P 		147.1
(-0.7)
P 		98.6
(-3)
P 		128
C 187.8
(3)
P 		180
(2.5)
P 		181.9
(2.6)
P 		101.5
(-3)
P 		86
avr 213.7
(3) 		176.6
(1.2) 		181.7
(1.4) 		93
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 288.3
(1.3)
P 		91.6
(-2.2)
P 		297.9
(1.4)
P 		48.5
(-2.9)
P 		386.6
(3)
P 		44.6
(-3)
P 		342
B 430.1
(3)
P 		388.5
(2.3)
P 		338.4
(1.4)
P 		232.4
(-0.4)
P 		255
(-0)
P 		83.5
(-3)
P 		347
C 44.5
(-3)
P 		467.1
(3)
P 		72
(-2.6)
P 		157.2
(-1.4)
P 		81.3
(-2.5)
P 		47.7
(-3)
P 		423
avr 254.3
(1.6) 		315.7
(3) 		236.1
(1.1) 		146
(-1) 		241
(1.3) 		58.6
(-3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27594
Sequence Type Exemplar sequence
Representative Public ID CEC3943 NCBI
Target Description CEC3943_rc /REP_DB=TREMBL Accession /GB=C10394 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk145d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC3943
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC3943 CEC3943_rc /REP_DB=TREMBL Accession /GB=C10394 /FEA=Transcript Cluster /REVCOMP /DEF=C.elegans cDNA clone yk145d8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:5631-6391(-) 91.01 91.01
Sequence
Target Sequence 
>C. ELEGANS:173339_AT
cttccaaatactccgtctgcaatagaaaatctagcttctatatactctattaattgaatt
cctgtaaaataagctgccaataaacatgttaaaattatactattagtacatcttttattt
ctaagtaatctgtgatgtgctcaagttactgtaacaccactccttaataaaataattgta
tttaataacggtacaccaaatggattaactaagtgcattccaaaaggtgatcaagtctct
cccaactcgtgtactggtactagagcagcatcaanaaatgttcaaaaaatacagaagnag
aatataaactccctaaacacaaataaaattactccgaatttaaacccgtctataacgnnn
nnnttatggtaacctcttaaaccttctatagcaatatccttacctcaagcaaaagaaata
aataacccagaaaatagtgtaaaantaannnnttcgtatagtccattatttannnnntnt
tnnnnnnatcttaacattccggctgaggcnnnnnntaaattaattgcacccgttgaaagt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCAAATACTCCGTCTGCAATAG 515 219 202 Antisense
AAATCTAGCTTCTATATACTCTATT 81 119 228 Antisense
GAATTCCTGTAAAATAAGCTGCCAA 216 323 257 Antisense
ATCTGTGATGTGCTCAAGTTACTGT 593 33 329 Antisense
AGTTACTGTAACACCACTCCTTAAT 522 59 345 Antisense
CAAAAGGTGATCAAGTCTCTCCCAA 240 191 422 Antisense
TCTCCCAACTCGTGTACTGGTACTA 294 583 439 Antisense
GAATATAAACTCCCTAAACACAAAT 573 319 501 Antisense
GTAACCTCTTAAACCTTCTATAGCA 131 463 570 Antisense
CTATAGCAATATCCTTACCTCAAGC 241 225 587 Antisense
TAAATTAATTGCACCCGTTGAAAGT 212 569 717 Antisense
Sequence Source Affymetrix Proprietary Database