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[173338_s_at]

Description AV196756 /REP_DB=TREMBL Accession /GB=AV196756 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658a7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3192
1 2 3 4 range
A 2247.9
(-1.3)
P 		2733.3
(0.4)
P 		3471.4
(3)
P 		1756.7
(-3)
P 		1715
B 2184.5
(-1.1)
P 		2581
(-0.4)
P 		4381.6
(3)
P 		1189.5
(-3)
P 		3192
C 1726.9
(-3)
P 		3833.3
(3)
P 		3199.6
(1.2)
P 		1852
(-2.6)
P 		2106
avr 2053.1
(-1.7) 		3049.2
(1.2) 		3684.2
(3) 		1599.4
(-3) 		2085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5114
1 2 3 4 5 6 range
A 2499.6
(-1.3)
P 		2312.3
(-1.5)
P 		6149
(3)
P 		3540.4
(-0.1)
P 		2347.4
(-1.5)
P 		1035.2
(-3)
P 		5114
B 2400.5
(-1.4)
P 		3499.2
(3)
P 		3057.4
(1.2)
P 		2621
(-0.5)
P 		3409.6
(2.6)
P 		2003.4
(-3)
P 		1496
C 2613.7
(1.5)
P 		2178
(-0.1)
P 		2620.9
(1.6)
P 		3010.1
(3)
P 		2502.4
(1.1)
P 		1386.6
(-3)
P 		1624
avr 2504.6
(-0.5) 		2663.2
(-0.1) 		3942.4
(3) 		3057.2
(0.8) 		2753.1
(0.1) 		1475.1
(-3) 		2467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 862
1 2 3 4 range
A 818.5
(2.2)
P 		593.3
(0.1)
P 		907.5
(3)
P 		257.1
(-3)
P 		650
B 696.6
(0.5)
P 		637.4
(0)
P 		1015.3
(3)
P 		253.5
(-3)
P 		762
C 571.7
(-1.1)
P 		1102.1
(2.9)
P 		1115.2
(3)
P 		312.3
(-3)
P 		803
avr 695.6
(0.4) 		777.6
(1.1) 		1012.7
(3) 		274.3
(-3) 		738

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1133
1 2 3 4 5 6 range
A 460.8
(-1.8)
P 		822.4
(0.1)
P 		1339.1
(3)
P 		897.9
(0.6)
P 		708.3
(-0.5)
P 		252
(-3)
P 		1087
B 835.3
(-1.8)
P 		1164.7
(1.1)
P 		742.4
(-2.6)
P 		694.2
(-3)
P 		1385.3
(3)
P 		747.1
(-2.5)
P 		691
C 968.8
(3)
P 		664.6
(-0.6)
P 		667.1
(-0.6)
P 		605.3
(-1.3)
P 		809.7
(1.1)
P 		464.2
(-3)
P 		505
avr 755
(0.3) 		883.9
(2) 		916.2
(2.4) 		732.5
(0.1) 		967.8
(3) 		487.8
(-3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173338_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28029
Sequence Type Exemplar sequence
Representative Public ID AV196756 NCBI
Target Description AV196756 /REP_DB=TREMBL Accession /GB=AV196756 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658a7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067837 NCBI Caenorhabditis elegans Y69A2AR.3 (Y69A2AR.3) mRNA, complete cds. 11/11 None
SNAP00000018825 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2641309:2647275:1 11/11 None
GENEFINDER00000018849 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2641309:2649502:1 11/11 None
Y69A2AR.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:2641305:2642109:1 gene:Y69A2AR.3 11/11 None
Y69A2AR.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:2641307:2642113:1 gene:Y69A2AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2641324-2642064(+) 65.9 65.9
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.3
Entrez Gene 177047 Entrez gene
SwissProt Q95XG6 EMBL-EBI
WormBase CE27518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68564 Resistance to inhibitors of cholinesterase protein 8, isoform a [Caenorhabditis elegans] ref|NP_001023561.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] gb|AAG10199.1| synembryn [Caenorhabditis elegans] 0.0
blast CAE68210 Hypothetical protein CBG13878 [Caenorhabditis briggsae] 0.0
blast CAE68210 Hypothetical protein CBG13878 [Caenorhabditis briggsae] 1.0E-111
blast AAP31421 Resistance to inhibitors of cholinesterase protein 8, isoform b [Caenorhabditis elegans] ref|NP_001023562.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] 2.0E-54
blast AAK68575 Hypothetical protein Y69A2AR.3 [Caenorhabditis elegans] ref|NP_500238.1| Y69A2AR.3 [Caenorhabditis elegans] 1.0E-41
blast AAK68575 Hypothetical protein Y69A2AR.3 [Caenorhabditis elegans] ref|NP_500238.1| Y69A2AR.3 [Caenorhabditis elegans] 3.0E-39
blast CAE68211 Hypothetical protein CBG13879 [Caenorhabditis briggsae] 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:173338_S_AT
ggaatcgagcacgcagagaaggccagacnnnnnnnnnnnnnnnnnnnnnnnnnnncactg
tacaaatgcgacgaatacctgaaattcgacaaatactcgtacgctcacgccgaaatcacc
atgaacaaggatcgtgtcgttcagccgtcctacaagaaggccgacgttcttccga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCGAGCACGCAGAGAAGGCCA 43 533 97 Antisense
ATCGAGCACGCAGAGAAGGCCAGAC 28 37 100 Antisense
CACTGTACAAATGCGACGAATACCT 107 197 152 Antisense
GCGACGAATACCTGAAATTCGACAA 656 289 164 Antisense
TCGACAAATACTCGTACGCTCACGC 518 599 182 Antisense
CTCACGCCGAAATCACCATGAACAA 585 227 200 Antisense
GCCGAAATCACCATGAACAAGGATC 394 285 205 Antisense
GAACAAGGATCGTGTCGTTCAGCCG 432 353 219 Antisense
TCGTTCAGCCGTCCTACAAGAAGGC 76 605 233 Antisense
TCAGCCGTCCTACAAGAAGGCCGAC 441 623 237 Antisense
TACAAGAAGGCCGACGTTCTTCCGA 470 641 247 Antisense
Sequence Source Affymetrix Proprietary Database