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[173335_s_at]

Description AV202733 /REP_DB=TREMBL Accession /GB=AV202733 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554b3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 39      6grp_total > 85      4grp_total > 45      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4212
1 2 3 4 range
A 5434.2
(3)
P 		4956.5
(2.2)
P 		2972.1
(-1)
P 		1725
(-3)
P 		3709
B 5286.9
(2.9)
P 		5354
(3)
P 		2954.5
(-1.1)
P 		1850.9
(-3)
P 		3503
C 5937
(3)
P 		4661.7
(1.2)
P 		2874.3
(-1.4)
P 		1747.5
(-3)
P 		4190
avr 5552.7
(3) 		4990.7
(2.1) 		2933.6
(-1.2) 		1774.5
(-3) 		3778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4939
1 2 3 4 5 6 range
A 5076.1
(-1.4)
P 		3791.1
(-3)
P 		5334.5
(-1.1)
P 		7922.3
(2)
P 		7502.5
(1.5)
P 		8730.1
(3)
P 		4939
B 4809.3
(-1.9)
P 		4027.4
(-3)
P 		5248
(-1.3)
P 		7356.4
(1.7)
P 		7453.1
(1.9)
P 		8249
(3)
P 		4222
C 4520.4
(-2.1)
P 		3946.3
(-3)
P 		5547.7
(-0.6)
P 		7905.7
(3)
P 		7847.3
(2.9)
P 		7844.7
(2.9)
P 		3959
avr 4801.9
(-1.8) 		3921.6
(-3) 		5376.7
(-1) 		7728.1
(2.2) 		7601
(2.1) 		8274.6
(3) 		4353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1726
1 2 3 4 range
A 1978.6
(3)
P 		1075.9
(-0.1)
P 		777
(-1.2)
P 		252.5
(-3)
P 		1726
B 1686
(3)
P 		1322.3
(1.3)
P 		684.6
(-1.7)
P 		394.4
(-3)
P 		1292
C 1965.3
(3)
P 		1340.3
(0.8)
P 		1001.8
(-0.5)
P 		294.7
(-3)
P 		1671
avr 1876.6
(3) 		1246.2
(0.6) 		821.1
(-1.1) 		313.9
(-3) 		1563

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2140
1 2 3 4 5 6 range
A 935.7
(-3)
P 		1348.3
(-1.1)
P 		1161.7
(-2)
P 		2009.3
(1.8)
P 		2263.9
(3)
P 		2125.5
(2.4)
P 		1328
B 1673.4
(-1.7)
P 		1340.6
(-2.8)
P 		1274.4
(-3)
P 		1948.4
(-0.8)
P 		3028.1
(2.8)
P 		3076
(3)
P 		1802
C 1675.5
(-1)
P 		1204.1
(-3)
P 		1412
(-2.1)
P 		1589.8
(-1.4)
P 		2539.3
(2.6)
P 		2626.1
(3)
P 		1422
avr 1428.2
(-2.3) 		1297.7
(-2.9) 		1282.7
(-3) 		1849.2
(-0.4) 		2610.4
(3) 		2609.2
(3) 		1328
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173335_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28005
Sequence Type Exemplar sequence
Representative Public ID AV202733 NCBI
Target Description AV202733 /REP_DB=TREMBL Accession /GB=AV202733 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554b3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071341 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-3) (dod-3) mRNA, complete cds. 11/11 None
SNAP00000038282 ENSEMBL cdna:SNAP chromosome:CEL140:V:2730530:2730907:-1 11/11 None
GENEFINDER00000038289 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2730530:2730907:-1 11/11 None
C24B9.9.2 ENSEMBL cdna:known chromosome:CEL140:V:2730142:2730924:-1 gene:C24B9.9 11/11 None
C24B9.9.3 ENSEMBL cdna:known chromosome:CEL140:V:2730142:2730924:-1 gene:C24B9.9 11/11 None
C24B9.9.1 ENSEMBL cdna:known chromosome:CEL140:V:2730142:2730924:-1 gene:C24B9.9 11/11 None
C24B9.9.4 ENSEMBL cdna:known chromosome:CEL140:V:2730421:2730911:-1 gene:C24B9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2730420-2730871(-) 84.81 84.81
Public Domain and Genome References
Gene Title
Gene Symbol dod-3
Ensembl C24B9.9
Entrez Gene 178737 Entrez gene
SwissProt O76438 EMBL-EBI
WormBase CE17451 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19247 Downstream of daf-16 (regulated by daf-16) protein 3 [Caenorhabditis elegans] ref|NP_503742.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-3) [Caenorhabditis elegans] 6.0E-50
blast CAE75158 Hypothetical protein CBG23095 [Caenorhabditis briggsae] 1.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503742.1 1 84-101
C24B9.9.2 1 84-101
C24B9.9.3 1 84-101
C24B9.9.1 1 84-101
C24B9.9.4 1 84-101
SNAP00000038282 1 84-101
GENEFINDER00000038289 1 84-101
Sequence
Target Sequence 
>C. ELEGANS:173335_S_AT
tgttacgccaccaccgtatatggacccagctaatgcgcaggccaagaagaagtgggcccg
ggtccgacaggagtcctgctctcagatgaagccatgtgcatattgtggagctgcgccaga
agcccnnnaagccatgttcccgaatgagccggtgttcatgtggcccgcccaacgtccgac
caactatatccaccaggattcgaaacaattcatcggatacgtcctccttattgctgttgt
cattttcttgctttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTACGCCACCACCGTATATGGAC 223 559 42 Antisense
ATATGGACCCAGCTAATGCGCAGGC 354 3 59 Antisense
GAGTCCTGCTCTCAGATGAAGCCAT 104 401 112 Antisense
GAAGCCATGTGCATATTGTGGAGCT 659 343 129 Antisense
TATTGTGGAGCTGCGCCAGAAGCCC 430 663 142 Antisense
AAGCCATGTTCCCGAATGAGCCGGT 387 147 170 Antisense
GAATGAGCCGGTGTTCATGTGGCCC 691 331 183 Antisense
TCCGACCAACTATATCCACCAGGAT 223 595 216 Antisense
ACAATTCATCGGATACGTCCTCCTT 433 113 246 Antisense
TCCTCCTTATTGCTGTTGTCATTTT 554 593 263 Antisense
TTGCTGTTGTCATTTTCTTGCTTTT 99 703 272 Antisense
Sequence Source Affymetrix Proprietary Database