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[173334_s_at]

Description AV189761 /REP_DB=TREMBL Accession /GB=AV189761 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk562c2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 06      4grp_high_8_8 > 21      6grp_highest_nonorm > 17      6grp_total > 21      4grp_total > 18      6grp_highest_sub > 02      6grp_cgc > 44      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9095
1 2 3 4 range
A 15668.4
(-3)
P 		19527
(1.9)
P 		16632.3
(-1.8)
P 		20369.8
(3)
P 		4701
B 13670.1
(-3)
P 		15319.2
(-0.3)
P 		15774.6
(0.5)
P 		17302.3
(3)
P 		3632
C 12829.2
(-3)
P 		14934
(-1.6)
P 		13268.5
(-2.7)
P 		21924.2
(3)
P 		9095
avr 14055.9
(-3) 		16593.4
(-0.4) 		15225.1
(-1.8) 		19865.4
(3) 		5810

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5999
1 2 3 4 5 6 range
A 12830.5
(1.3)
P 		10561.4
(-1.8)
P 		14117.3
(3)
P 		11370.8
(-0.7)
P 		9684.9
(-3)
P 		10145.5
(-2.4)
P 		4432
B 12175.7
(0.6)
P 		13535
(3)
P 		11116.2
(-1.2)
P 		10096.4
(-3)
P 		10833.2
(-1.7)
P 		11129.9
(-1.2)
P 		3439
C 9422.1
(-1.6)
P 		13854.5
(3)
P 		11755
(0.8)
P 		8786.6
(-2.3)
P 		9223.9
(-1.8)
P 		8118.1
(-3)
P 		5736
avr 11476.1
(0.5) 		12650.3
(3) 		12329.5
(2.3) 		10084.6
(-2.4) 		9914
(-2.8) 		9797.8
(-3) 		2853
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2723
1 2 3 4 range
A 5704.9
(3)
P 		4238.8
(-0.2)
P 		4348
(0)
P 		2981.7
(-3)
P 		2723
B 4359.3
(3)
P 		3783.5
(-1.9)
P 		3655.3
(-3)
P 		3687.1
(-2.7)
P 		704
C 4246.8
(0.6)
P 		4293.6
(0.9)
P 		4624.5
(3)
P 		3696.8
(-3)
P 		928
avr 4770.3
(3) 		4105.3
(-0) 		4209.3
(0.4) 		3455.2
(-3) 		1315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2738
1 2 3 4 5 6 range
A 2365.2
(-3)
P 		3756.2
(3)
P 		3074.5
(0.1)
P 		2883.9
(-0.8)
P 		2922.5
(-0.6)
P 		2470.1
(-2.5)
P 		1391
B 4236.6
(2.1)
P 		4505.2
(3)
P 		2699.3
(-2.9)
P 		2674.2
(-3)
P 		4401.4
(2.7)
P 		4150.3
(1.8)
P 		1831
C 3492.4
(1.2)
P 		4227.4
(3)
P 		2991.8
(-0)
P 		1767
(-3)
P 		2984.7
(-0)
P 		2717.6
(-0.7)
P 		2460
avr 3364.7
(0.2) 		4162.9
(3) 		2921.9
(-1.3) 		2441.7
(-3) 		3436.2
(0.5) 		3112.7
(-0.7) 		1721
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173334_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27782
Sequence Type Exemplar sequence
Representative Public ID AV189761 NCBI
Target Description AV189761 /REP_DB=TREMBL Accession /GB=AV189761 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk562c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070170 NCBI Caenorhabditis elegans Ribosomal Protein, Acidic family member (rpa-2) (rpa-2) mRNA, complete cds. 11/11 None
SNAP00000008072 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13369507:13370249:-1 11/11 None
GENEFINDER00000008088 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13369507:13370249:-1 11/11 None
Y62E10A.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:13369388:13370261:-1 gene:Y62E10A.1 11/11 None
Y62E10A.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:13369395:13370261:-1 gene:Y62E10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13369467-13370249(-) 94.39 94.39
Public Domain and Genome References
Gene Title
Gene Symbol rpa-2
Ensembl Y62E10A.1
Entrez Gene 178297 Entrez gene
SwissProt Q9U1X9 EMBL-EBI
WormBase CE22694 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17910_AT 60S acidic ribosomal protein P2 (RPP2B) at
ATH1-121501:266256_AT 60S acidic ribosomal protein P2 (RPP2B) at
CANINE:1600273_AT similar to 60S acidic ribosomal protein P2 cfa
CANINE:1584672_AT similar to 60S acidic ribosomal protein P2 cfa
CANINE_2:CFA.12459.1.S1_S_AT similar to 60S acidic ribosomal protein P2 cfa
CANINE_2:CFA.12459.1.S1_X_AT similar to 60S acidic ribosomal protein P2 cfa
CANINE_2:CFAAFFX.9410.1.S1_AT similar to 60S acidic ribosomal protein P2 cfa
DROSOPHILA_2:1623150_AT Ribosomal protein LP2 dm
DROSGENOME1:143326_AT Ribosomal protein LP2 dm
CHICKEN:GGA.9470.1.S1_A_AT ribosomal protein, large, P2 gga
CHICKEN:GGA.9470.2.S1_AT ribosomal protein, large, P2 gga
HG-U133A:200909_S_AT ribosomal protein, large, P2 hs
HG-U133_PLUS_2:200909_S_AT ribosomal protein, large, P2 hs
HG-FOCUS:200909_S_AT ribosomal protein, large, P2 hs
HG-U133A_2:200909_S_AT ribosomal protein, large, P2 hs
HUGENEFL:AB002533_AT ribosomal protein, large, P2 hs
U133_X3P:G4506670_3P_S_AT ribosomal protein, large, P2 hs
HG-U95AV2:32487_S_AT ribosomal protein, large, P2 hs
HG-U133_PLUS_2:200908_S_AT ribosomal protein, large, P2 hs
HG-U133A_2:200908_S_AT ribosomal protein, large, P2 hs
HG-U133A:200908_S_AT ribosomal protein, large, P2 hs
HG-U133A_2:217670_AT Ribosomal protein, large, P2 hs
HG-U133_PLUS_2:217670_AT Ribosomal protein, large, P2 hs
HG-U133A:217670_AT Ribosomal protein, large, P2 hs
MU11KSUBA:AA541913_F_AT ribosomal protein, large P2 mm
MU11KSUBA:AA691239_F_AT ribosomal protein, large P2 mm
MG-U74CV2:169027_I_AT ribosomal protein, large P2 mm
MOE430A:1415879_A_AT ribosomal protein, large P2 mm
MOUSE430A_2:1415879_A_AT ribosomal protein, large P2 mm
MOUSE430_2:1415879_A_AT ribosomal protein, large P2 mm
MU11KSUBA:AA541913_I_AT Ribosomal protein, large P2, mRNA (cDNA clone MGC:6693 IMAGE:3583752) mm
MU11KSUBA:AA541913_R_AT Ribosomal protein, large P2, mRNA (cDNA clone MGC:6693 IMAGE:3583752) mm
MU19KSUBA:TC18611_F_AT Ribosomal protein, large P2, mRNA (cDNA clone MGC:6693 IMAGE:3583752) mm
MU19KSUBB:TC30551_F_AT Ribosomal protein, large P2, mRNA (cDNA clone MGC:6693 IMAGE:3583752) mm
RAE230A:1371340_AT ribosomal protein, large P2 rn
RAT230_2:1371340_AT ribosomal protein, large P2 rn
RG-U34A:X55153MRNA_S_AT similar to 60S acidic ribosomal protein P2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
6414 translational elongation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60595 Hypothetical protein Y62E10A.1 [Caenorhabditis elegans] ref|NP_502571.1| Ribosomal Protein, Acidic family member (rpa-2) [Caenorhabditis elegans] 4.0E-23
blast CAE58616 Hypothetical protein CBG01783 [Caenorhabditis briggsae] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001813 EMBL-EBI Ribosomal protein 60S 4.1E-32
Sequence
Target Sequence 
>C. ELEGANS:173334_S_AT
tgctcgccgtcctcggaggaaatgccaacccaaaggttgacgacctcaagaacatcttga
gcgctgtcggagttgatgctgatgctgagaccgccaagctcgttgtctccagacttgcag
gaaagacagtcgaagagctcatcgctgagggatccgctggactcgtttcggtttccggag
gagccgccccagccgccgtcgctgctccagctgccggaggagctgccccagccgctgaca
gcaagccggccaagaaagaanagccaaaggaggaatccgacgatgatatgggattcggtc
ttttcgac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCGCCGTCCTCGGAGGAAATGC 103 579 41 Antisense
GTCCTCGGAGGAAATGCCAACCCAA 499 475 49 Antisense
GCCAACCCAAAGGTTGACGACCTCA 468 1 64 Antisense
GGTTGACGACCTCAAGAACATCTTG 19 507 75 Antisense
GAACATCTTGAGCGCTGTCGGAGTT 68 351 90 Antisense
GCGCTGTCGGAGTTGATGCTGATGC 580 287 101 Antisense
ATGCTGATGCTGAGACCGCCAAGCT 708 41 116 Antisense
CTCGTTGTCTCCAGACTTGCAGGAA 336 233 139 Antisense
GCTGACAGCAAGCCGGCCAAGAAAG 93 297 274 Antisense
GGAGGAATCCGACGATGATATGGGA 476 515 309 Antisense
TGATATGGGATTCGGTCTTTTCGAC 546 563 324 Antisense
Sequence Source Affymetrix Proprietary Database