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[173333_s_at]

Description AV189693 /REP_DB=TREMBL Accession /GB=AV189693 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561d8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 08      6grp_total > 42      4grp_total > 16      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16178
1 2 3 4 range
A 22894.3
(-3)
P 		28591.2
(-0.6)
P 		27700.2
(-0.9)
P 		36873.5
(3)
P 		13979
B 23010.1
(-3)
P 		24494.6
(-2.1)
P 		27659.6
(-0.1)
P 		32509.4
(3)
P 		9499
C 20695.2
(-3)
P 		24416.9
(-1.6)
P 		24422.3
(-1.6)
P 		36600.3
(3)
P 		15905
avr 22199.9
(-3) 		25834.2
(-1.3) 		26594
(-1) 		35327.7
(3) 		13128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5218
1 2 3 4 5 6 range
A 17923.6
(-0.3)
P 		19053.2
(1)
P 		20787.9
(3)
P 		18828.7
(0.7)
P 		15570.2
(-3)
P 		17502.3
(-0.8)
P 		5218
B 18820.3
(0.7)
P 		18513.2
(0.3)
P 		20213.6
(3)
P 		16513.5
(-3)
P 		16581.9
(-2.9)
P 		16499.6
(-3)
P 		3714
C 18323.4
(0.4)
P 		18239
(0.2)
P 		18944.3
(1.9)
P 		18150.4
(-0.1)
P 		19421.1
(3)
P 		16924.9
(-3)
P 		2496
avr 18355.8
(-0.2) 		18601.8
(0.2) 		19981.9
(3) 		17830.9
(-1.3) 		17191.1
(-2.6) 		16975.6
(-3) 		3006
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3114
1 2 3 4 range
A 8335.8
(3)
P 		6206.4
(-1.3)
P 		7241.4
(0.8)
P 		5397.6
(-3)
P 		2938
B 7337.8
(3)
P 		6049.6
(-3)
P 		6409.4
(-1.3)
P 		6927.8
(1.1)
P 		1288
C 6850.7
(-1.3)
P 		7020
(-0.8)
P 		8511.9
(3)
P 		6171.4
(-3)
P 		2341
avr 7508.1
(3) 		6425.3
(-1.8) 		7387.6
(2.5) 		6165.6
(-3) 		1343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3488
1 2 3 4 5 6 range
A 3304.1
(-3)
P 		6776.3
(3)
P 		4527.2
(-0.9)
P 		4775.4
(-0.5)
P 		4698.4
(-0.6)
P 		4261.3
(-1.3)
P 		3472
B 6548.6
(2.5)
P 		6162.3
(1.5)
P 		4908.5
(-1.6)
P 		4373.9
(-3)
P 		6737
(3)
P 		6152.6
(1.5)
P 		2363
C 6791.7
(3)
P 		5565.3
(0.7)
P 		4821.7
(-0.8)
P 		3650.1
(-3)
P 		6284.4
(2)
P 		5665.7
(0.8)
P 		3142
avr 5548.1
(1) 		6168
(3) 		4752.5
(-1.5) 		4266.5
(-3) 		5906.6
(2.2) 		5359.9
(0.5) 		1902
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173333_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27921
Sequence Type Exemplar sequence
Representative Public ID AV189693 NCBI
Target Description AV189693 /REP_DB=TREMBL Accession /GB=AV189693 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561d8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064556 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-43) (rpl-43) mRNA, complete cds. 11/11 None
SNAP00000022955 ENSEMBL cdna:SNAP chromosome:CEL140:II:14155185:14155460:1 11/11 None
GENEFINDER00000022975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14155185:14155460:1 11/11 None
Y48B6A.2.2 ENSEMBL cdna:known chromosome:CEL140:II:14155185:14155715:1 gene:Y48B6A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14155165-14155461(+) 71.95 71.95
Public Domain and Genome References
Gene Title
Gene Symbol rpl-43
Ensembl Y48B6A.2
Entrez Gene 175070 Entrez gene
SwissProt Q9U2A8 EMBL-EBI
WormBase CE22117 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256434_AT 60S ribosomal protein L37a (RPL37aB) at
CANINE:1604139_AT similar to 60S ribosomal protein L37a cfa
CANINE_2:CFAAFFX.26567.1.S1_AT similar to 60S ribosomal protein L37a cfa
CANINE_2:CFAAFFX.31041.1.S1_AT similar to 60S ribosomal protein L37a cfa
CANINE_2:CFAAFFX.3492.1.S1_X_AT similar to 60S ribosomal protein L37a cfa
DROSOPHILA_2:1639957_S_AT Ribosomal protein L37A dm
DROSGENOME1:145808_AT Ribosomal protein L37A dm
HG-U133_PLUS_2:213459_AT ribosomal protein L37a hs
HG-U133A_2:213459_AT ribosomal protein L37a hs
HG-U133A:213459_AT ribosomal protein L37a hs
HG-U133A_2:201429_S_AT ribosomal protein L37a hs
HG-U133A:201429_S_AT ribosomal protein L37a hs
HG-U133_PLUS_2:201429_S_AT ribosomal protein L37a hs
HG-FOCUS:201429_S_AT ribosomal protein L37a hs
HU35KSUBD:RC_H48475_AT ribosomal protein L37a hs
HG-U95AV2:31962_AT ribosomal protein L37a hs
U133_X3P:201429_3P_S_AT ribosomal protein L37a hs
HU35KSUBD:RC_AA223243_S_AT ribosomal protein L37a hs
HUGENEFL:L06499_AT ribosomal protein L37a hs
U133_X3P:G4506642_3P_S_AT ribosomal protein L37a hs
U133_X3P:G4506642_3P_AT ribosomal protein L37a hs
U133_X3P:HS.296290.0.A1_3P_AT ribosomal protein L37a hs
HG-U133A_2:214041_X_AT Ribosomal protein L37a hs
HG-U133_PLUS_2:214041_X_AT Ribosomal protein L37a hs
HG-U133A:214041_X_AT Ribosomal protein L37a hs
U133_X3P:HS.5566.3.A1_3P_AT Ribosomal protein L37a hs
U133_X3P:HS.5566.3.A1_3P_X_AT Ribosomal protein L37a hs
U133_X3P:214041_3P_X_AT Ribosomal protein L37a hs
MU11KSUBB:X73331_F_AT ribosomal protein L37a mm
MG-U74AV2:93822_AT ribosomal protein L37a mm
MOE430A:1460543_X_AT ribosomal protein L37a mm
MOUSE430A_2:1460543_X_AT ribosomal protein L37a mm
MOUSE430_2:1460543_X_AT ribosomal protein L37a mm
MOE430A:1439447_X_AT ribosomal protein L37a mm
MOUSE430A_2:1439447_X_AT ribosomal protein L37a mm
MOUSE430_2:1439447_X_AT ribosomal protein L37a mm
MOE430A:1416218_X_AT ribosomal protein L37a mm
MOUSE430A_2:1416218_X_AT ribosomal protein L37a mm
MOUSE430_2:1416218_X_AT ribosomal protein L37a mm
MOE430A:1416217_A_AT ribosomal protein L37a mm
MOUSE430A_2:1416217_A_AT ribosomal protein L37a mm
MOUSE430_2:1416217_A_AT ribosomal protein L37a mm
MU19KSUBA:TC16907_AT Ribosomal protein L37a (Rpl37a), mRNA mm
MU19KSUBB:TC27083_AT Ribosomal protein L37a (Rpl37a), mRNA mm
RG-U34B:RC_AA900050_AT hypothetical protein LOC500547 rn
YEAST_2:1779559_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl43Ap and has similarity to rat L37a ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE73452 Hypothetical protein CBG20901 [Caenorhabditis briggsae] 4.0E-36
blast CAB54440 Hypothetical protein Y48B6A.2 [Caenorhabditis elegans] ref|NP_496957.1| Ribosomal Protein, Large subunit family member (rpl-43) [Caenorhabditis elegans] sp|Q9U2A8|RL37A_CAEEL 60S ribosomal protein L37a 4.0E-36
blast AAC08431 60S ribosomal protein [Ostertagia ostertagi] sp|O61598|RL37A_OSTOS 60S ribosomal protein L37a 9.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002674 EMBL-EBI Ribosomal L37ae protein 4.2E-59
Sequence
Target Sequence 
>C. ELEGANS:173333_S_AT
gaactaagaaggtcggaatcgtcggaaagtacggaacccgttatggtgcttccctccgta
agatggccaagaagctcgaagtcgcacagcactcccgctacacctgctcgttctgcggaa
aggaggccatgaagcgaaaggccaccggaatctggaactgtgccaagtgccacaaggtcg
tcgccggaggagcctacgtctacggaaccgtcaccgccgctaccgtcagatccaccatca
gaagactgagagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTAAGAAGGTCGGAATCGTCGG 559 343 76 Antisense
CTTCCCTCCGTAAGATGGCCAAGAA 692 219 124 Antisense
GATGGCCAAGAAGCTCGAAGTCGCA 544 405 137 Antisense
AGAAGCTCGAAGTCGCACAGCACTC 60 75 145 Antisense
CACCTGCTCGTTCTGCGGAAAGGAG 445 201 176 Antisense
TGCGGAAAGGAGGCCATGAAGCGAA 469 583 189 Antisense
ATGAAGCGAAAGGCCACCGGAATCT 161 39 204 Antisense
GGCCACCGGAATCTGGAACTGTGCC 19 543 215 Antisense
AATCTGGAACTGTGCCAAGTGCCAC 308 169 224 Antisense
TGTGCCAAGTGCCACAAGGTCGTCG 331 557 234 Antisense
TCCACCATCAGAAGACTGAGAGATC 487 587 306 Antisense
Sequence Source Affymetrix Proprietary Database