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[173329_s_at] 40S ribosomal protein S16

Description AV203825 /REP_DB=TREMBL Accession /GB=AV203825 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk582b12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 17      6grp_cgc > 91      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20642
1 2 3 4 range
A 25699.1
(-3)
P 		35914.9
(0.3)
P 		32706.4
(-0.8)
P 		44490.6
(3)
P 		18792
B 28448.2
(-3)
P 		31403.1
(-0.9)
P 		31993.2
(-0.4)
P 		36706.7
(3)
P 		8259
C 26526.8
(-2.9)
P 		29218.4
(-2.1)
P 		26091.5
(-3)
P 		46340.6
(3)
P 		20249
avr 26891.4
(-3) 		32178.8
(-1) 		30263.7
(-1.7) 		42512.6
(3) 		15621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9251
1 2 3 4 5 6 range
A 26742
(1.7)
P 		22332.3
(-1.9)
P 		28367.6
(3)
P 		24283.4
(-0.3)
P 		20933.4
(-3)
P 		22492.5
(-1.7)
P 		7434
B 23324.6
(-0.8)
P 		21517.1
(-2)
P 		29159.2
(3)
P 		22428.9
(-1.4)
P 		21777.2
(-1.8)
P 		19908.2
(-3)
P 		9251
C 22479.3
(-1)
P 		22938.3
(-0.2)
P 		24631.1
(2.6)
P 		24888
(3)
P 		23837
(1.3)
P 		21232.3
(-3)
P 		3656
avr 24182
(-0.1) 		22262.6
(-2) 		27386
(3) 		23866.8
(-0.4) 		22182.5
(-2.1) 		21211
(-3) 		6175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2844
1 2 3 4 range
A 9357
(3)
P 		7796.2
(-0.3)
P 		8550.1
(1.3)
P 		6512.6
(-3)
P 		2844
B 9071.9
(3)
P 		7755.8
(-1.8)
P 		7413.6
(-3)
P 		7822.2
(-1.5)
P 		1658
C 8781.1
(1.5)
P 		8400.5
(-0.2)
P 		9093.7
(3)
P 		7813.8
(-3)
P 		1280
avr 9070
(3) 		7984.2
(-0.9) 		8352.5
(0.4) 		7382.9
(-3) 		1687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3918
1 2 3 4 5 6 range
A 4929.7
(-3)
P 		7942.5
(3)
P 		6177.9
(-0.5)
P 		6158.8
(-0.6)
P 		6316.8
(-0.2)
P 		5476.2
(-1.9)
P 		3013
B 8115.8
(1.5)
P 		7162.1
(-0.5)
P 		7080.7
(-0.6)
P 		5940.6
(-3)
P 		8847.8
(3)
P 		7423.7
(0.1)
P 		2907
C 8332.1
(3)
P 		6999.2
(0.6)
P 		6269
(-0.7)
P 		5005
(-3)
P 		7713.3
(1.9)
P 		7107.7
(0.8)
P 		3327
avr 7125.9
(1.4) 		7367.9
(2.2) 		6509.2
(-0.5) 		5701.5
(-3) 		7626
(3) 		6669.2
(0) 		1925
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173329_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27864
Sequence Type Exemplar sequence
Representative Public ID AV203825 NCBI
Target Description AV203825 /REP_DB=TREMBL Accession /GB=AV203825 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk582b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074289 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-16) (rps-16) mRNA, complete cds. 11/11 A 
SNAP00000022414 ENSEMBL cdna:SNAP chromosome:CEL140:V:15002645:15003123:-1 11/11 None
GENEFINDER00000022420 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15002645:15003123:-1 11/11 None
T01C3.6.3 ENSEMBL cdna:known chromosome:CEL140:V:15002603:15003129:-1 gene:T01C3.6 11/11 A 
T01C3.6.1 ENSEMBL cdna:known chromosome:CEL140:V:15002603:15003180:-1 gene:T01C3.6 11/11 A 
T01C3.6.2 ENSEMBL cdna:known chromosome:CEL140:V:15002603:15003127:-1 gene:T01C3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15002625-15003016(-) 86.32 86.32
Public Domain and Genome References
Gene Title 40S ribosomal protein S16
Gene Symbol rps-16
Ensembl T01C3.6
Entrez Gene 179998 Entrez gene
SwissProt Q22054 EMBL-EBI
WormBase CE12918 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263821_S_AT 40S ribosomal protein S16 (RPS16A) at
ATGENOME1:17390_AT 40S ribosomal protein S16 (RPS16A) at
CANINE:1602670_X_AT similar to 40S ribosomal protein S16 cfa
CANINE:1585742_X_AT similar to 40S ribosomal protein S16 cfa
CANINE:1586029_X_AT similar to 40S ribosomal protein S16 cfa
CANINE:1584838_X_AT similar to 40S ribosomal protein S16 cfa
CANINE:1583909_X_AT similar to 40S ribosomal protein S16 cfa
CANINE:1583860_X_AT similar to 40S ribosomal protein S16 cfa
CANINE_2:CFAAFFX.9209.1.S1_AT similar to 40S ribosomal protein S16 cfa
CANINE_2:CFAAFFX.9209.1.S1_S_AT similar to 40S ribosomal protein S16 cfa
DROSOPHILA_2:1639270_AT Ribosomal protein S16 dm
DROSGENOME1:147686_AT Ribosomal protein S16 dm
CHICKEN:GGA.4509.1.S1_AT similar to 40S ribosomal protein S16 gga
HG-U95AV2:38061_AT ribosomal protein S16 hs
HG-U133_PLUS_2:201258_AT ribosomal protein S16 hs
HG-FOCUS:201258_AT ribosomal protein S16 hs
HG-U133A:201258_AT ribosomal protein S16 hs
HG-U133A_2:201258_AT ribosomal protein S16 hs
HUGENEFL:M60854_AT ribosomal protein S16 hs
U133_X3P:G4506690_3P_A_AT ribosomal protein S16 hs
HG-U133A_2:213890_X_AT ribosomal protein S16 hs
HG-U133_PLUS_2:213890_X_AT ribosomal protein S16 hs
HG-U133A:213890_X_AT ribosomal protein S16 hs
HG-U133_PLUS_2:226130_AT ribosomal protein S16 hs
HG-U133B:226130_AT ribosomal protein S16 hs
HG-U133_PLUS_2:226131_S_AT ribosomal protein S16 hs
HG-U133B:226131_S_AT ribosomal protein S16 hs
HG-U95E:87783_AT ribosomal protein S16 hs
U133_X3P:HS.80617.2.S1_3P_X_AT Ribosomal protein S16 hs
MU11KSUBA:M11408_F_AT ribosomal protein S16 mm
MU11KSUBB:MSA.133.0_F_AT ribosomal protein S16 mm
MG-U74AV2:97647_AT ribosomal protein S16 mm
MG-U74CV2:169860_R_AT ribosomal protein S16 mm
MOE430A:1416404_S_AT ribosomal protein S16 mm
MOUSE430A_2:1416404_S_AT ribosomal protein S16 mm
MOUSE430_2:1416404_S_AT ribosomal protein S16 mm
MOE430B:1437196_X_AT ribosomal protein S16 mm
MOUSE430_2:1437196_X_AT ribosomal protein S16 mm
MOE430B:1455835_AT Ribosomal protein S16 (Rps16), mRNA mm
MOUSE430_2:1455835_AT Ribosomal protein S16 (Rps16), mRNA mm
MU19KSUBC:TC37285_AT Ribosomal protein S16 (Rps16), mRNA mm
RG-U34A:X17665CDS_S_AT ribosomal protein S16 rn
RG-U34B:RC_AI009810_AT ribosomal protein S16 rn
RG-U34C:RC_AI230338_AT ribosomal protein S16 rn
RAE230A:1371318_AT ribosomal protein S16 rn
RAT230_2:1371318_AT ribosomal protein S16 rn
YEAST_2:1773960_AT Protein component of the small (40S) ribosomal subunit; identical to Rps16Ap and has similarity to E. coli S9 and rat S16 ribosomal proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01658 Hypothetical protein T01C3.6 [Caenorhabditis elegans] ref|NP_506690.1| Ribosomal Protein, Small subunit family member (rps-16) [Caenorhabditis elegans] sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 3.0E-76
blast CAE66338 Hypothetical protein CBG11589 [Caenorhabditis briggsae] 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000754 EMBL-EBI Ribosomal protein S9 9.3E-77
Sequence
Target Sequence 
>C. ELEGANS:173329_S_AT
ggaacgcttccaggatgtcgacatcagaatccgtgttagcggtggaggacacgttgccca
gatctacgctgtccgtcaagcccttgccaaggctctcgttgcctactaccacaagtacgt
tgacgagcagagcaagagagaattgaagaacatcttcgccgcttacgacaagtccctttt
ggttgctgacccaagacgccgtgagtccaagaagttcggtggaccaggagcccgcgctcg
ctaccagaagtcttaccgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGCTTCCAGGATGTCGACATC 478 529 80 Antisense
GTCGACATCAGAATCCGTGTTAGCG 18 475 96 Antisense
TTAGCGGTGGAGGACACGTTGCCCA 537 681 115 Antisense
TCGTTGCCTACTACCACAAGTACGT 631 603 175 Antisense
ACTACCACAAGTACGTTGACGAGCA 529 101 184 Antisense
TTGAAGAACATCTTCGCCGCTTACG 617 701 222 Antisense
GCTTACGACAAGTCCCTTTTGGTTG 668 299 240 Antisense
CTTTTGGTTGCTGACCCAAGACGCC 577 1 255 Antisense
AGACGCCGTGAGTCCAAGAAGTTCG 268 71 273 Antisense
AGAAGTTCGGTGGACCAGGAGCCCG 7 7 289 Antisense
CTCGCTACCAGAAGTCTTACCGTTA 182 227 316 Antisense
Sequence Source Affymetrix Proprietary Database