[Home] | [Total List]

[173326_s_at]

Description AV181338_rc /REP_DB=TREMBL Accession /GB=AV181338 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 47      6grp_total > 39      4grp_total > 0      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4041
1 2 3 4 range
A 3170.8
(-2.8)
P 		3054.8
(-3)
P 		5508.8
(1.5)
P 		6334.1
(3)
P 		3279
B 3581.3
(-3)
P 		3560.9
(-3)
P 		5006.6
(-0.5)
P 		7095.8
(3)
P 		3535
C 3187
(-3)
P 		3294.9
(-2.8)
P 		5021.1
(0.5)
P 		6348.6
(3)
P 		3162
avr 3313
(-3) 		3303.5
(-3) 		5178.8
(0.4) 		6592.8
(3) 		3289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2220
1 2 3 4 5 6 range
A 4052.9
(2)
P 		3187.7
(-2.5)
P 		3133.8
(-2.8)
P 		3099.6
(-3)
P 		4234.5
(3)
P 		3692.4
(0.1)
P 		1135
B 3623.5
(2.3)
P 		3650.5
(2.4)
P 		2014.2
(-3)
P 		3829
(3)
P 		3760
(2.8)
P 		3493.6
(1.9)
P 		1815
C 2814.9
(-3)
P 		3840.7
(3)
P 		3278
(-0.3)
P 		3060.3
(-1.6)
P 		3107.1
(-1.3)
P 		3119.4
(-1.2)
P 		1026
avr 3497.1
(1.6) 		3559.6
(2.1) 		2808.7
(-3) 		3329.6
(0.5) 		3700.5
(3) 		3435.1
(1.2) 		892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1087
1 2 3 4 range
A 1154.5
(0.8)
P 		663.1
(-3)
P 		1440.1
(3)
P 		927.2
(-1)
P 		777
B 1142
(-0.5)
P 		879.5
(-3)
P 		1160.1
(-0.3)
P 		1512.1
(3)
P 		633
C 1055
(-2.2)
P 		947.3
(-3)
P 		1750
(3)
P 		1070.5
(-2.1)
P 		803
avr 1117.2
(-0.2) 		830
(-3) 		1450.1
(3) 		1169.9
(0.3) 		620

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1039
1 2 3 4 5 6 range
A 747.1
(-2.3)
P 		1133.7
(1.5)
P 		682.5
(-3)
P 		786.1
(-2)
P 		1277.8
(3)
P 		899
(-0.8)
P 		595
B 1260.8
(1.5)
P 		1215.1
(1.2)
P 		489.1
(-3)
P 		1014.2
(0)
P 		1527.7
(3)
P 		1302.8
(1.7)
P 		1039
C 1043.4
(1.6)
P 		1171.9
(3)
P 		834.3
(-0.6)
P 		615.4
(-3)
P 		1005.4
(1.2)
P 		1044.2
(1.6)
P 		557
avr 1017.1
(0.5) 		1173.6
(2) 		668.6
(-3) 		805.2
(-1.6) 		1270.3
(3) 		1082
(1.1) 		602
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173326_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27881
Sequence Type Exemplar sequence
Representative Public ID AV181338 NCBI
Target Description AV181338_rc /REP_DB=TREMBL Accession /GB=AV181338 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk619a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075396(11), NM_075395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075396 NCBI Caenorhabditis elegans Y43F8B.2b (Y43F8B.2) mRNA, complete cds. 11/11 A 
NM_075395 NCBI Caenorhabditis elegans Y43F8B.2a (Y43F8B.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000027196 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19522740:19524408:-1 11/11 None
Y43F8B.2b ENSEMBL cdna:known chromosome:CEL140:V:19522557:19525359:-1 gene:Y43F8B.2 11/11 A 
Y43F8B.2a ENSEMBL cdna:known chromosome:CEL140:V:19522740:19535682:-1 gene:Y43F8B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19522670-19522909(-) 77.1 77.1
Public Domain and Genome References
Ensembl Y43F8B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21509 Hypothetical protein Y43F8B.2a [Caenorhabditis elegans] ref|NP_507796.1| Y43F8B.2a [Caenorhabditis elegans] 1.0E-169
blast CAA21510 Hypothetical protein Y43F8B.2b [Caenorhabditis elegans] ref|NP_507797.1| Y43F8B.2b [Caenorhabditis elegans] 1.0E-114
blast CAE61718 Hypothetical protein CBG05668 [Caenorhabditis briggsae] 1.0E-104
blast CAA21509 Hypothetical protein Y43F8B.2a [Caenorhabditis elegans] ref|NP_507796.1| Y43F8B.2a [Caenorhabditis elegans] 2.0E-88
blast CAA21510 Hypothetical protein Y43F8B.2b [Caenorhabditis elegans] ref|NP_507797.1| Y43F8B.2b [Caenorhabditis elegans] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 5.2E-77
Sequence
Target Sequence 
>C. ELEGANS:173326_S_AT
gtgagaagcttgtgcagaggttgaagcttattgaggccggcgaggaagaccaggtggctc
catgtgcatccctccagtctccatctctttccactgattcgtcatcaaaagaatctcaat
actcttcaactgaatcccttccaattgtgacaccagtcagcacaccagctattgacccgg
attttaagcccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGAAGCTTGTGCAGAGGTTGAA 431 483 13 Antisense
GAGGTTGAAGCTTATTGAGGCCGGC 458 403 29 Antisense
TTGAGGCCGGCGAGGAAGACCAGGT 111 701 43 Antisense
GAGGAAGACCAGGTGGCTCCATGTG 607 403 54 Antisense
TCTCTTTCCACTGATTCGTCATCAA 542 611 96 Antisense
AATACTCTTCAACTGAATCCCTTCC 595 171 130 Antisense
AACTGAATCCCTTCCAATTGTGACA 205 143 140 Antisense
TCCCTTCCAATTGTGACACCAGTCA 484 595 147 Antisense
TTGTGACACCAGTCAGCACACCAGC 179 707 157 Antisense
CAGTCAGCACACCAGCTATTGACCC 639 207 166 Antisense
TATTGACCCGGATTTTAAGCCCAAG 425 663 182 Antisense
Sequence Source Affymetrix Proprietary Database