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[173324_s_at]

Description AV184621_rc /REP_DB=TREMBL Accession /GB=AV184621 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk667b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 74      6grp_total > 55      4grp_total > 60      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1349
1 2 3 4 range
A 1446
(1.8)
P 		1234.2
(-0)
P 		1577.7
(3)
P 		893.7
(-3)
P 		684
B 1217
(-0.8)
P 		1718.7
(3)
P 		1534.3
(1.6)
P 		917.5
(-3)
P 		801
C 1918.3
(2.1)
P 		2126
(3)
P 		1963.1
(2.3)
P 		777.5
(-3)
P 		1349
avr 1527.1
(1.8) 		1693
(3) 		1691.7
(3) 		862.9
(-3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 315.4
(-3)
P 		802.6
(2)
P 		902.7
(3)
P 		471.5
(-1.4)
P 		601.5
(-0.1)
P 		581.8
(-0.3)
P 		587
B 980.5
(3)
P 		723.7
(-3)
P 		947.3
(2.2)
P 		837.5
(-0.3)
P 		857
(0.1)
P 		822.1
(-0.7)
P 		257
C 903.5
(1.6)
P 		745.7
(-0.2)
P 		594.7
(-1.9)
P 		495
(-3)
P 		676.3
(-1)
P 		1031.7
(3)
P 		537
avr 733.1
(0.7) 		757.3
(1.4) 		814.9
(3) 		601.3
(-3) 		711.6
(0.1) 		811.9
(2.9) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 526.5
(3)
P 		267.9
(-0.9)
P 		412.4
(1.3)
P 		130.8
(-3)
P 		396
B 388.1
(2)
P 		424.5
(3)
P 		355.5
(1.2)
P 		195.5
(-3)
P 		229
C 635
(2.5)
P 		611.2
(2.2)
P 		684.2
(3)
P 		131.1
(-3)
P 		553
avr 516.5
(3) 		434.5
(1.6) 		484
(2.5) 		152.5
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 58.1
(-3)
P 		285.5
(3)
P 		196.6
(0.7)
P 		119.6
(-1.4)
P 		181.5
(0.3)
P 		141.6
(-0.8)
P 		227
B 341.2
(2.7)
P 		240.9
(-2.1)
P 		230
(-2.6)
P 		221.8
(-3)
P 		348.2
(3)
P 		306.6
(1)
P 		126
C 334.9
(2.7)
P 		227.5
(0.1)
P 		151.4
(-1.7)
P 		99.5
(-3)
P 		218.9
(-0.1)
P 		345.4
(3)
P 		246
avr 244.7
(2) 		251.3
(2.3) 		192.7
(-0.7) 		147
(-3) 		249.5
(2.2) 		264.5
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173324_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27875
Sequence Type Exemplar sequence
Representative Public ID AV184621 NCBI
Target Description AV184621_rc /REP_DB=TREMBL Accession /GB=AV184621 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk667b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067056 NCBI Caenorhabditis elegans T28D6.6 (T28D6.6) mRNA, complete cds. 11/11 A 
SNAP00000007222 ENSEMBL cdna:SNAP chromosome:CEL140:III:11318334:11331588:-1 11/11 None
GENEFINDER00000007281 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11326141:11331957:-1 10/11 None
T28D6.6 ENSEMBL cdna:known chromosome:CEL140:III:11326531:11342984:-1 gene:T28D6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11326591-11328482(-) 98.05 98.05
Public Domain and Genome References
Gene Title
Ensembl T28D6.6
Entrez Gene 176563 Entrez gene
SwissProt Q9TVG4 EMBL-EBI
WormBase CE24022 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17808_AT GTP-binding protein, putative at
ATH1-121501:252883_AT GTP-binding protein, putative at
CANINE:1604205_AT similar to developmentally regulated GTP binding protein 1 cfa
CANINE_2:CFA.20114.1.S1_S_AT similar to developmentally regulated GTP binding protein 1 cfa
CANINE_2:CFAAFFX.20304.1.S1_AT similar to developmentally regulated GTP binding protein 1 cfa
DROSOPHILA_2:1624318_AT upstream of RpIII128 dm
DROSGENOME1:141617_AT upstream of RpIII128 dm
CHICKEN:GGA.9818.1.S1_S_AT developmentally regulated GTP binding protein 1 gga
HG-U133A:202810_AT developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:202810_AT developmentally regulated GTP binding protein 1 hs
HG-FOCUS:202810_AT developmentally regulated GTP binding protein 1 hs
HG-U133A_2:202810_AT developmentally regulated GTP binding protein 1 hs
U133_X3P:G4758795_3P_AT developmentally regulated GTP binding protein 1 hs
HG-U95AV2:41606_AT developmentally regulated GTP binding protein 1 hs
U133_X3P:HS.39297.0.A1_3P_AT Developmentally regulated GTP binding protein 1 hs
U133_X3P:HS.323713.0.S1_3P_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:235636_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:235636_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:235637_S_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:235637_S_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:236537_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:236537_AT Developmentally regulated GTP binding protein 1 hs
HG-U95B:46364_AT Developmentally regulated GTP binding protein 1 hs
HG-U95E:75990_AT Developmentally regulated GTP binding protein 1 hs
MU11KSUBA:D10715_S_AT developmentally regulated GTP binding protein 1 mm
MG-U74AV2:98020_AT developmentally regulated GTP binding protein 1 mm
MOE430A:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430A_2:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOE430A:1448336_AT developmentally regulated GTP binding protein 1 mm
MOUSE430A_2:1448336_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1448336_AT developmentally regulated GTP binding protein 1 mm
MOE430B:1447752_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1447752_X_AT developmentally regulated GTP binding protein 1 mm
MG-U74CV2:166330_I_AT Developmentally regulated GTP binding protein 1, mRNA (cDNA clone MGC:49486 IMAGE:5351885) mm
RAE230B:1391602_AT developmentally regulated GTP binding protein 1 (predicted) rn
RAT230_2:1391602_AT developmentally regulated GTP binding protein 1 (predicted) rn
RAE230B:1379116_AT Developmentally regulated GTP binding protein 1 (predicted) rn
RAT230_2:1379116_AT Developmentally regulated GTP binding protein 1 (predicted) rn
YEAST_2:1773564_AT Member of the DRG family of GTP-binding proteins; interacts with translating ribosomes Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 0.0
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 0.0
blast XP_394753 PREDICTED: similar to ENSANGP00000016179 [Apis mellifera] 1.0E-163
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 1.0E-163
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 1.0E-161
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 1.0E-146
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR004095 EMBL-EBI TGS domain 2.7E-37
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 6.0E-73
Pfam IPR004095 EMBL-EBI TGS domain 3.8E-16
Pfam IPR004095 EMBL-EBI TGS domain 3.3E-13
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 5.4E-95
Pfam IPR004095 EMBL-EBI TGS domain 2.7E-37
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173324_S_AT
tacacaaaaccgaagggacaactgcccgactactcgcaaccgattgttttgaatgccgaa
cgcaagagcatcgaagatttgtgtacgaaaattcacaaatcgctacagaaggacttcaag
tgcgctcttgtgtggggagcatctgcaaagcacaacccgcaacgtgtaggccgcgaccat
gtgctcatcgatgaggacgttgttcaggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACAAAACCGAAGGGACAACTGC 87 637 47 Antisense
CCGACTACTCGCAACCGATTGTTTT 538 263 72 Antisense
CGCAACCGATTGTTTTGAATGCCGA 699 253 81 Antisense
GAATGCCGAACGCAAGAGCATCGAA 91 331 97 Antisense
GAGCATCGAAGATTTGTGTACGAAA 186 389 112 Antisense
GTACGAAAATTCACAAATCGCTACA 29 453 129 Antisense
CACAAATCGCTACAGAAGGACTTCA 215 181 140 Antisense
GAAGGACTTCAAGTGCGCTCTTGTG 110 333 154 Antisense
AGTGCGCTCTTGTGTGGGGAGCATC 328 59 165 Antisense
CGCGACCATGTGCTCATCGATGAGG 710 255 218 Antisense
ATCGATGAGGACGTTGTTCAGGTCA 708 35 233 Antisense
Sequence Source Affymetrix Proprietary Database