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[173323_at]

Description AV177000_rc /REP_DB=TREMBL Accession /GB=AV177000 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk521f9 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 34.2
(-1.9)
A 		19.6
(-2.5)
A 		9.3
(-3)
A 		144.1
(3)
P 		135
B 30.8
(3)
A 		21.6
(0.7)
A 		6.5
(-3)
A 		27.5
(2.2)
A 		24
C 65.7
(-0.1)
A 		33.8
(-2.4)
A 		25.4
(-3)
A 		109.4
(3)
P 		84
avr 43.6
(-0.8) 		25
(-2.2) 		13.7
(-3) 		93.7
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 16.5
(-2.9)
A 		39.6
(-2.2)
A 		45.7
(-2)
A 		12.3
(-3)
A 		83.9
(-0.9)
A 		217.9
(3)
P 		206
B 72
(-2.1)
P 		38.4
(-2.8)
A 		43.9
(-2.7)
A 		28.3
(-3)
A 		67.2
(-2.2)
P 		320.7
(3)
P 		292
C 61.5
(-2.4)
A 		74.9
(-2.2)
M 		30.4
(-3)
A 		32.9
(-3)
A 		67.5
(-2.3)
A 		345.3
(3)
P 		315
avr 50
(-2.4) 		51
(-2.4) 		40
(-2.7) 		24.5
(-3) 		72.9
(-1.9) 		294.6
(3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.4
(0.2)
A 		4.3
(-2.4)
A 		2.4
(-3)
A 		21.1
(3)
P 		19
B 9.8
(3)
A 		5.3
(-0.3)
A 		1.5
(-3)
A 		5.9
(0.2)
A 		8
C 21.8
(3)
A 		9.7
(-2.6)
A 		8.9
(-3)
A 		18.4
(1.4)
P 		13
avr 14.7
(2.8) 		6.4
(-1.8) 		4.3
(-3) 		15.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 3
(-3)
A 		14.1
(-1.7)
A 		10
(-2.2)
A 		3.1
(-3)
A 		25.3
(-0.3)
A 		53.1
(3)
P 		50
B 25.1
(-2.1)
P 		12.8
(-2.7)
A 		10.7
(-2.8)
A 		7.5
(-3)
A 		27.3
(-1.9)
P 		119.6
(3)
P 		112
C 22.8
(-2.1)
A 		22.9
(-2.1)
M 		7.7
(-2.9)
A 		6.6
(-3)
A 		21.8
(-2.2)
A 		115.6
(3)
P 		109
avr 17
(-2.3) 		16.6
(-2.3) 		9.5
(-2.7) 		5.7
(-3) 		24.8
(-1.7) 		96.1
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27872
Sequence Type Exemplar sequence
Representative Public ID AV177000 NCBI
Target Description AV177000_rc /REP_DB=TREMBL Accession /GB=AV177000 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk521f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060435(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060435 NCBI Caenorhabditis elegans C35E7.1 (C35E7.1) mRNA, complete cds. 10/11 A 
SNAP00000026105 ENSEMBL cdna:SNAP chromosome:CEL140:I:10857586:10858133:1 10/11 None
GENEFINDER00000026113 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10857594:10858133:1 10/11 None
C35E7.1 ENSEMBL cdna:known chromosome:CEL140:I:10854899:10858502:1 gene:C35E7.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10857787-10858049(+) 82.28 82.28
Public Domain and Genome References
Gene Title
Ensembl C35E7.1
Entrez Gene 172993 Entrez gene
SwissProt O61775 EMBL-EBI
WormBase CE36273 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17517 Hypothetical protein C35E7.1 [Caenorhabditis elegans] ref|NP_492836.3| C35E7.1 [Caenorhabditis elegans] 0.0
blast AAC17517 Hypothetical protein C35E7.1 [Caenorhabditis elegans] ref|NP_492836.3| C35E7.1 [Caenorhabditis elegans] 3.0E-65
blast AAC17517 Hypothetical protein C35E7.1 [Caenorhabditis elegans] ref|NP_492836.3| C35E7.1 [Caenorhabditis elegans] 4.0E-64
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 7.0E-17
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:173323_AT
gatatgatcaacttcgtaacatcctatcaaaatatcaaaagccgctgaagaaagttggcg
gaccatttggaggtgttaaaggtggatcattcgaaggattgccacaaaggccagccaatg
gattttcgttcgaaactgagaaagttcaattggatgttctatctgattcggaggaatctg
atgaacagcaaactataattgcgactatcgcgaaaacatccagtattttgtacgaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGATCAACTTCGTAACATCCT 482 425 21 Antisense
AACTTCGTAACATCCTATCAAAATA 250 139 30 Antisense
GTTGGCGGACCATTTGGAGGTGTTA 664 435 74 Antisense
GGAGGTGTTAAAGGTGGATCATTCG 109 517 89 Antisense
GGATCATTCGAAGGATTGCCACAAA 663 511 104 Antisense
ATTGCCACAAAGGCCAGCCAATGGA 577 5 118 Antisense
GCCAGCCAATGGATTTTCGTTCGAA 528 273 130 Antisense
GGATGTTCTATCTGATTCGGAGGAA 227 515 172 Antisense
GCAAACTATAATTGCGACTATCGCG 144 319 208 Antisense
GCGACTATCGCGAAAACATCCAGTA 220 289 221 Antisense
AACATCCAGTATTTTGTACGAAGAG 281 137 235 Antisense
Sequence Source Affymetrix Proprietary Database