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[173322_at]

Description CEK091BYR_rc /REP_DB=TREMBL Accession /GB=D72187 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk91b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 08      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 73      6grp_total > 19      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 515.7
(3)
P 		459.5
(1.3)
P 		347
(-2)
P 		313
(-3)
P 		203
B 399.2
(-1)
P 		443.9
(0.6)
P 		342.6
(-3)
P 		512.5
(3)
P 		170
C 564.9
(3)
P 		455.8
(-1.3)
P 		512.7
(0.9)
P 		414.3
(-3)
P 		151
avr 493.3
(3) 		453.1
(0.4) 		400.8
(-3) 		413.3
(-2.2) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 437.2
(-1.8)
P 		481.8
(-0.3)
P 		586.4
(3)
P 		524.5
(1)
P 		553.5
(2)
P 		398.2
(-3)
P 		188
B 650.6
(2.5)
P 		358.6
(-3)
P 		676.5
(3)
P 		525.8
(0.2)
P 		477.6
(-0.8)
P 		479.7
(-0.7)
P 		318
C 834.8
(3)
P 		445.9
(-3)
P 		536.3
(-1.6)
P 		510.2
(-2)
P 		700.6
(0.9)
P 		546.4
(-1.4)
P 		389
avr 640.9
(3) 		428.8
(-3) 		599.7
(1.8) 		520.2
(-0.4) 		577.2
(1.2) 		474.8
(-1.7) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 187.8
(3)
P 		99.7
(-0.7)
P 		90.7
(-1.1)
P 		45.8
(-3)
P 		142
B 127.3
(3)
P 		109.6
(0.8)
P 		79.4
(-3)
P 		109.2
(0.7)
P 		48
C 187
(3)
P 		131.1
(0.1)
P 		178.7
(2.6)
P 		69.9
(-3)
P 		117
avr 167.4
(3) 		113.5
(-0.5) 		116.3
(-0.3) 		75
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 80.6
(-3)
P 		171.3
(3)
P 		127.7
(0.1)
P 		133
(0.5)
P 		167
(2.7)
P 		97
(-1.9)
P 		91
B 226.4
(3)
P 		119.4
(-3)
P 		164.3
(-0.5)
P 		139.3
(-1.9)
P 		194.1
(1.2)
P 		178.9
(0.3)
P 		107
C 309.4
(3)
P 		136.1
(-2)
P 		136.5
(-2)
P 		102.6
(-3)
P 		226.7
(0.6)
P 		182.9
(-0.7)
P 		207
avr 205.5
(3) 		142.3
(-1.7) 		142.8
(-1.7) 		125
(-3) 		195.9
(2.3) 		152.9
(-0.9) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27834
Sequence Type Exemplar sequence
Representative Public ID CEK091BYR NCBI
Target Description CEK091BYR_rc /REP_DB=TREMBL Accession /GB=D72187 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk91b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027787(11), NM_001027788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027787 NCBI Caenorhabditis elegans Y82E9BR.14a (Y82E9BR.14) mRNA, complete cds. 11/11 None
NM_001027788 NCBI Caenorhabditis elegans Y82E9BR.14b (Y82E9BR.14) mRNA, complete cds. 11/11 None
SNAP00000008913 ENSEMBL cdna:SNAP chromosome:CEL140:III:1409519:1417177:-1 10/11 None
GENEFINDER00000008936 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1409519:1409689:-1 9/11 None
Y82E9BR.14a.1 ENSEMBL cdna:known chromosome:CEL140:III:1409301:1414106:-1 gene:Y82E9BR.14 11/11 None
Y82E9BR.14a.2 ENSEMBL cdna:known chromosome:CEL140:III:1409354:1414108:-1 gene:Y82E9BR.14 11/11 None
Y82E9BR.14b ENSEMBL cdna:known chromosome:CEL140:III:1409359:1412855:-1 gene:Y82E9BR.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1409353-1409698(-) 93.94 93.94
Public Domain and Genome References
Ensembl Y82E9BR.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP46261 Hypothetical protein Y82E9BR.14b [Caenorhabditis elegans] ref|NP_001022959.1| Y82E9BR.14b [Caenorhabditis elegans] 1.0E-175
blast AAK26154 Hypothetical protein Y82E9BR.14a [Caenorhabditis elegans] ref|NP_001022958.1| Y82E9BR.14a [Caenorhabditis elegans] 1.0E-131
blast CAE66437 Hypothetical protein CBG11708 [Caenorhabditis briggsae] 1.0E-114
blast AAP46261 Hypothetical protein Y82E9BR.14b [Caenorhabditis elegans] ref|NP_001022959.1| Y82E9BR.14b [Caenorhabditis elegans] 4.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 1.7E-22
Sequence
Target Sequence 
>C. ELEGANS:173322_AT
tttaaagtagtcacaatggccgtccnttaccgccnnnnaatcctaaaagcngttgctttg
ggccaagaagggctcgacgacgtctgtattcatcatatccagtgccatttggacaatttc
cggcttaacgtgaagacactggtggattattatattgagaagaagctcgatacgccnnnn
nnnnnnnnnnnnnnnnnnnnngctganttttccccactgattttcgcctannnnnatgct
cnnnnnngnnnncnnnnnnnnnnnnnnnnnnnnnnnnaccctcctgaaccccaaatcccc
aaattttattgtgatgtgct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAAAGTAGTCACAATGGCCGTCC 192 671 25 Antisense
GTTGCTTTGGGCCAAGAAGGGCTCG 520 291 76 Antisense
GAAGGGCTCGACGACGTCTGTATTC 420 335 91 Antisense
GACGACGTCTGTATTCATCATATCC 680 379 100 Antisense
GTATTCATCATATCCAGTGCCATTT 359 453 110 Antisense
AGTGCCATTTGGACAATTTCCGGCT 512 59 125 Antisense
GGACAATTTCCGGCTTAACGTGAAG 691 525 135 Antisense
CCGGCTTAACGTGAAGACACTGGTG 219 259 144 Antisense
GACACTGGTGGATTATTATATTGAG 108 367 159 Antisense
ATATTGAGAAGAAGCTCGATACGCC 710 17 176 Antisense
TCCCCAAATTTTATTGTGATGTGCT 22 597 320 Antisense
Sequence Source Affymetrix Proprietary Database