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[173318_at]

Description CEC3943_rc /REP_DB=TREMBL Accession /GB=C10394 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 19      6grp_total > 54      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14940
1 2 3 4 range
A 19113.6
(-3)
P 		19058.1
(-3)
P 		19251.9
(-2.9)
P 		27009.8
(3)
P 		7952
B 17764.4
(-2.9)
P 		17554.6
(-3)
P 		19703.4
(-1.5)
P 		26281.5
(3)
P 		8727
C 16584.9
(-3)
P 		18562.6
(-2.2)
P 		17902
(-2.5)
P 		31524.9
(3)
P 		14940
avr 17821
(-3) 		18391.8
(-2.7) 		18952.4
(-2.4) 		28272.1
(3) 		10451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8103
1 2 3 4 5 6 range
A 18427.8
(-1)
P 		17476.1
(-1.7)
P 		23615.1
(3)
P 		18369.1
(-1)
P 		15746.5
(-3)
P 		17553.5
(-1.6)
P 		7869
B 17796.3
(-0.3)
P 		16555.8
(-1.8)
P 		20617.7
(3)
P 		17119
(-1.1)
P 		15512
(-3)
P 		19179.4
(1.3)
P 		5106
C 16255.6
(-3)
P 		17934.9
(0.4)
P 		17705.8
(-0)
P 		18534.3
(1.7)
P 		17428.4
(-0.6)
P 		19183.5
(3)
P 		2928
avr 17493.2
(-1.3) 		17322.3
(-1.5) 		20646.2
(3) 		18007.5
(-0.6) 		16229
(-3) 		18638.8
(0.3) 		4417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3006
1 2 3 4 range
A 6959.3
(3)
P 		4137
(-2.6)
P 		5032.8
(-0.8)
P 		3953.7
(-3)
P 		3006
B 5664.9
(3)
P 		4335.6
(-3)
P 		4565.7
(-2)
P 		5600.6
(2.7)
P 		1329
C 5490.1
(-1.9)
P 		5336.8
(-2.9)
P 		6239.4
(3)
P 		5315.6
(-3)
P 		924
avr 6038.1
(3) 		4603.1
(-3) 		5279.3
(-0.2) 		4956.6
(-1.5) 		1435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3755
1 2 3 4 5 6 range
A 3397
(-3)
P 		6215.4
(3)
P 		5142.9
(0.7)
P 		4658.8
(-0.3)
P 		4751.6
(-0.1)
P 		4273.7
(-1.1)
P 		2818
B 6192.2
(0.8)
P 		5510.7
(-0.8)
P 		5006.6
(-1.9)
P 		4534.2
(-3)
P 		6302.3
(1.1)
P 		7151.9
(3)
P 		2618
C 6025.2
(2.1)
P 		5472.5
(0.9)
P 		4506.4
(-1.3)
P 		3727.3
(-3)
P 		5639.6
(1.3)
P 		6421.8
(3)
P 		2695
avr 5204.8
(0.3) 		5732.9
(2.2) 		4885.3
(-0.9) 		4306.8
(-3) 		5564.5
(1.6) 		5949.1
(3) 		1642
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27592
Sequence Type Exemplar sequence
Representative Public ID CEC3943 NCBI
Target Description CEC3943_rc /REP_DB=TREMBL Accession /GB=C10394 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
MTCE.22 ENSEMBL cdna:pseudogene chromosome:CEL140:MtDNA:5621:5676:1 gene:MTCE.22 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:5631-6391(+) 91.01 91.01
Public Domain and Genome References
Ensembl MTCE.22
Sequence
Target Sequence 
>C. ELEGANS:173318_AT
ctgggttatttatttcttttgcttgaggtaaggatattgctatagaaggtttaagaggtt
accataannnnnncgttatagacgggtttaaattcggagtaattttatttgtgtttaggg
agtttatattctncttctgtattttttgaacatttnttgatgctgctctagtaccagtac
acgagttgggagagacttgatcaccttttggaatgcacttagttaatccatttggtgtac
cgttattaaatacaattattttattaaggagtggtgttacagtaacttgagcacatcaca
gattacttagaaataaaagatgtactaatagtataattttaacatgtttattggcagctt
attttacaggaattcaattaatagagtatatagaagctagattttctattgcagacggag
tatttggaaggattttttatttatctacgggatttcacggaattcatgtcttgtgtggtg
gtttgttcttagcatttaatctttnacgtcttctaagngaatcattttaattgantcatc
atctggggttggaatttgct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGGTTATTTATTTCTTTTGCTTG 249 239 195 Antisense
GATGCTGCTCTAGTACCAGTACACG 421 413 353 Antisense
GTTGGGAGAGACTTGATCACCTTTT 436 437 379 Antisense
GATCACCTTTTGGAATGCACTTAGT 488 421 393 Antisense
TAATCCATTTGGTGTACCGTTATTA 363 633 418 Antisense
AACTTGAGCACATCACAGATTACTT 326 139 478 Antisense
GCTAGATTTTCTATTGCAGACGGAG 519 303 590 Antisense
TATCTACGGGATTTCACGGAATTCA 620 651 636 Antisense
ACGGAATTCATGTCTTGTGTGGTGG 475 93 651 Antisense
GTGTGGTGGTTTGTTCTTAGCATTT 140 487 667 Antisense
TCATCATCTGGGGTTGGAATTTGCT 8 611 730 Antisense
Sequence Source Affymetrix Proprietary Database