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[173316_s_at]

Description CEC5543_rc /REP_DB=TREMBL Accession /GB=C10554 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk148h7 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.7
(-2.7)
A 		2.3
(-3)
A 		3
(-2.8)
A 		30.1
(3)
A 		28
B 3.4
(-3)
A 		3.6
(-2.5)
A 		4.5
(-0.5)
A 		6
(3)
A 		3
C 1.7
(-2.9)
A 		1.3
(-3)
A 		22.1
(3)
A 		2.7
(-2.6)
A 		21
avr 2.9
(-2.7) 		2.4
(-3) 		9.9
(1.3) 		12.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1209
1 2 3 4 5 6 range
A 3.8
(-3)
A 		4.9
(-3)
A 		26
(-2.9)
A 		4.2
(-3)
A 		930.1
(3)
P 		856.1
(2.5)
P 		926
B 1.9
(-3)
A 		3
(-3)
A 		1.8
(-3)
A 		7.8
(-3)
A 		1170.1
(3)
P 		945.6
(1.8)
P 		1168
C 3.8
(-3)
A 		4.5
(-3)
A 		2.1
(-3)
A 		12.6
(-2.9)
A 		1210.4
(3)
P 		945
(1.7)
P 		1208
avr 3.2
(-3) 		4.1
(-3) 		10
(-3) 		8.2
(-3) 		1103.5
(3) 		915.6
(2) 		1100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-1.6)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		4.4
(3)
A 		4
B 1.1
(0)
A 		0.9
(-3)
A 		1
(-1.5)
A 		1.3
(3)
A 		0
C 0.5
(-2.9)
A 		0.4
(-3)
A 		7.7
(3)
A 		0.4
(-3)
A 		7
avr 1
(-2.1) 		0.6
(-3) 		3.2
(3) 		2
(0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.8
(-3)
A 		5.7
(-2.9)
A 		1.1
(-3)
A 		280.7
(3)
P 		208.4
(1.5)
P 		280
B 0.7
(-3)
A 		1
(-3)
A 		0.4
(-3)
A 		2.1
(-3)
A 		475.4
(3)
P 		352.6
(1.4)
P 		475
C 1.4
(-3)
A 		1.4
(-3)
A 		0.5
(-3)
A 		2.5
(-3)
A 		391.7
(3)
P 		316.4
(1.8)
P 		391
avr 0.9
(-3) 		1.4
(-3) 		2.2
(-3) 		1.9
(-3) 		382.6
(3) 		292.5
(1.6) 		382
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173316_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28004
Sequence Type Exemplar sequence
Representative Public ID CEC5543 NCBI
Target Description CEC5543_rc /REP_DB=TREMBL Accession /GB=C10554 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk148h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077586 NCBI Caenorhabditis elegans Y62H9A.6 (Y62H9A.6) mRNA, complete cds. 11/11 A 
SNAP00000025458 ENSEMBL cdna:SNAP chromosome:CEL140:X:11883074:11883900:1 11/11 None
GENEFINDER00000025476 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11883074:11883900:1 11/11 None
Y62H9A.6 ENSEMBL cdna:known chromosome:CEL140:X:11883068:11883947:1 gene:Y62H9A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11883297-11883903(+) 82.77 82.77
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.6
Entrez Gene 181365 Entrez gene
SwissProt Q9XWT3 EMBL-EBI
WormBase CE19242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21562 Hypothetical protein Y62H9A.6 [Caenorhabditis elegans] ref|NP_509987.1| Y62H9A.6 [Caenorhabditis elegans] 2.0E-73
blast CAE69408 Hypothetical protein CBG15570 [Caenorhabditis briggsae] 3.0E-29
blast CAE69410 Hypothetical protein CBG15572 [Caenorhabditis briggsae] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:173316_S_AT
aacaatctcttgccctagcaatacccaccacatatgcaattattgccgacaaatctggaa
gtaatgtctcgcaaggagacataaccatccaagacgcagtgctcttgtccaccggagtta
acatcgatgtcgtgggaagataccgtggtcgccgtaccactgttgtggctaacaatggag
acgaagtcaaaatcaaaacagttgtttgcgtcgagttgtcaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATCTCTTGCCCTAGCAATACC 695 133 94 Antisense
GCAATTATTGCCGACAAATCTGGAA 348 323 129 Antisense
AATCTGGAAGTAATGTCTCGCAAGG 618 167 145 Antisense
TCTCGCAAGGAGACATAACCATCCA 20 611 160 Antisense
GAGACATAACCATCCAAGACGCAGT 2 393 169 Antisense
TAACCATCCAAGACGCAGTGCTCTT 481 637 175 Antisense
CCACCGGAGTTAACATCGATGTCGT 624 273 202 Antisense
TCGCCGTACCACTGTTGTGGCTAAC 155 599 242 Antisense
GTGGCTAACAATGGAGACGAAGTCA 107 491 258 Antisense
AAACAGTTGTTTGCGTCGAGTTGTC 163 129 289 Antisense
GTTGTTTGCGTCGAGTTGTCAACCT 564 437 294 Antisense
Sequence Source Affymetrix Proprietary Database