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[173315_at]

Description CEK089D1R_rc /REP_DB=TREMBL Accession /GB=D72069 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk89d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 17      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20743
1 2 3 4 range
A 29324.4
(-3)
P 		34448.8
(-1.4)
P 		34347.3
(-1.4)
P 		48651.5
(3)
P 		19327
B 29333.6
(-3)
P 		32022.3
(-1.2)
P 		33602.2
(-0.1)
P 		38286.1
(3)
P 		8953
C 27908.1
(-3)
P 		30551.9
(-2.1)
P 		28806.1
(-2.7)
P 		45625.5
(3)
P 		17717
avr 28855.4
(-3) 		32341
(-1.6) 		32251.9
(-1.7) 		44187.7
(3) 		15332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9370
1 2 3 4 5 6 range
A 29730.9
(3)
P 		24390.1
(-0.9)
P 		29189.6
(2.6)
P 		26571
(0.7)
P 		21502
(-3)
P 		25659.7
(0)
P 		8229
B 24424.3
(0.2)
P 		23689.6
(-0.3)
P 		27884.3
(3)
P 		22274.3
(-1.5)
P 		21030.4
(-2.5)
P 		20361.2
(-3)
P 		7523
C 23263.8
(-0.4)
P 		24031.2
(0.4)
P 		26622.9
(3)
P 		24030.5
(0.4)
P 		24768.9
(1.1)
P 		20658.4
(-3)
P 		5965
avr 25806.3
(0.8) 		24037
(-1.1) 		27898.9
(3) 		24291.9
(-0.8) 		22433.8
(-2.8) 		22226.4
(-3) 		5673
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3555
1 2 3 4 range
A 10677
(3)
P 		7477.9
(-2.4)
P 		8979.1
(0.1)
P 		7121.6
(-3)
P 		3555
B 9354.3
(3)
P 		7908.8
(-2.5)
P 		7786.4
(-3)
P 		8158.8
(-1.6)
P 		1568
C 9238.4
(1)
P 		8783.9
(-0.2)
P 		10039.8
(3)
P 		7693.2
(-3)
P 		2347
avr 9756.6
(3) 		8056.9
(-1.9) 		8935.1
(0.7) 		7657.9
(-3) 		2099

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3842
1 2 3 4 5 6 range
A 5480.6
(-3)
P 		8674.3
(3)
P 		6356.9
(-1.4)
P 		6739
(-0.6)
P 		6488.4
(-1.1)
P 		6247.3
(-1.6)
P 		3194
B 8498.5
(2.9)
P 		7885.3
(1.5)
P 		6771.1
(-1)
P 		5899.7
(-3)
P 		8544.4
(3)
P 		7592.6
(0.8)
P 		2645
C 8622.9
(3)
P 		7332.7
(1)
P 		6776
(0.1)
P 		4832.6
(-3)
P 		8014.8
(2)
P 		6915.6
(0.3)
P 		3790
avr 7534
(1.8) 		7964.1
(3) 		6634.7
(-0.7) 		5823.8
(-3) 		7682.5
(2.2) 		6918.5
(0.1) 		2140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27836
Sequence Type Exemplar sequence
Representative Public ID CEK089D1R NCBI
Target Description CEK089D1R_rc /REP_DB=TREMBL Accession /GB=D72069 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk89d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058526(11), NM_058527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058526 NCBI Caenorhabditis elegans Y37E3.8a (Y37E3.8) mRNA, complete cds. 11/11 None
NM_058527 NCBI Caenorhabditis elegans Y37E3.8b (Y37E3.8) mRNA, complete cds. 11/11 None
SNAP00000001190 ENSEMBL cdna:SNAP chromosome:CEL140:I:2069723:2084282:-1 11/11 None
GENEFINDER00000001219 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2069723:2070606:-1 11/11 None
Y37E3.8a.3 ENSEMBL cdna:known chromosome:CEL140:I:2069681:2070611:-1 gene:Y37E3.8 11/11 None
Y37E3.8a.2 ENSEMBL cdna:known chromosome:CEL140:I:2069681:2070609:-1 gene:Y37E3.8 11/11 None
Y37E3.8a.1 ENSEMBL cdna:known chromosome:CEL140:I:2069681:2070611:-1 gene:Y37E3.8 11/11 None
Y37E3.8b ENSEMBL cdna:known chromosome:CEL140:I:2069723:2070786:-1 gene:Y37E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2069691-2070517(-) 99.47 99.47
Public Domain and Genome References
Ensembl Y37E3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490927 Y37E3.8a [Caenorhabditis elegans] gb|AAK27870.1| Hypothetical protein Y37E3.8a [Caenorhabditis elegans] 6.0E-70
blast CAE74330 Hypothetical protein CBG22043 [Caenorhabditis briggsae] 7.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001196 EMBL-EBI Ribosomal protein L15 3.4E-11
Pfam IPR001196 EMBL-EBI Ribosomal protein L15 3.4E-11
Pfam IPR001196 EMBL-EBI Ribosomal protein L15 3.4E-11
Sequence
Target Sequence 
>C. ELEGANS:173315_AT
taacgccggaggtcaacatcaccaccgtatcaaccgtgacaagtaccatcctggatactt
cggaaaggttggaatgagagtgttccatctcaacaagaaccaacactactgcccaaccgt
caacgtcgagcgtttgtggtctcttgtcccacaggaggttcgcgacaaggccaccggagg
caaatccccagtcattgactgcaccaagcttggatacttcaaggttctcggaaaaggact
cctcccagagactccactcatcgttaaagccagattcttctcccacgaggctgagcaaaa
gatcaagaaggccggaggagcttgtgttttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGCCGGAGGTCAACATCACCAC 474 637 22 Antisense
ATCACCACCGTATCAACCGTGACAA 694 27 39 Antisense
AACCGTGACAAGTACCATCCTGGAT 414 147 53 Antisense
CCAACCGTCAACGTCGAGCGTTTGT 452 273 134 Antisense
CCACAGGAGGTTCGCGACAAGGCCA 387 275 170 Antisense
CAGTCATTGACTGCACCAAGCTTGG 688 207 210 Antisense
GTTCTCGGAAAAGGACTCCTCCCAG 51 367 245 Antisense
CAGAGACTCCACTCATCGTTAAAGC 12 205 267 Antisense
TCGTTAAAGCCAGATTCTTCTCCCA 366 603 282 Antisense
TCTTCTCCCACGAGGCTGAGCAAAA 336 617 297 Antisense
AGGCCGGAGGAGCTTGTGTTTTGGT 337 1 330 Antisense
Sequence Source Affymetrix Proprietary Database