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[173312_s_at]

Description CEK084B1R_rc /REP_DB=TREMBL Accession /GB=D71935 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk84b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 13      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 798.4
(-0.6)
P 		1240.3
(3)
P 		1010.5
(1.1)
P 		503.8
(-3)
P 		737
B 864.4
(0.8)
P 		1049.9
(2.8)
P 		1070.4
(3)
P 		501.9
(-3)
P 		569
C 819.8
(0.1)
P 		1062.1
(2.3)
P 		1147.7
(3)
P 		462.6
(-3)
P 		685
avr 827.5
(0.2) 		1117.4
(3) 		1076.2
(2.6) 		489.4
(-3) 		628

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 783
1 2 3 4 5 6 range
A 639.2
(0.4)
P 		856.1
(3)
P 		736.3
(1.6)
P 		413.4
(-2.3)
P 		401.3
(-2.5)
P 		357.9
(-3)
P 		498
B 911.4
(1.1)
P 		1138.5
(3)
P 		943.2
(1.4)
P 		502.2
(-2.4)
P 		427.7
(-3)
P 		471.4
(-2.6)
P 		711
C 705.5
(-0.6)
P 		1141
(3)
P 		499.8
(-2.3)
P 		531.1
(-2)
P 		420.5
(-2.9)
P 		412.6
(-3)
P 		728
avr 752
(0.2) 		1045.2
(3) 		726.4
(-0) 		482.2
(-2.4) 		416.5
(-3) 		414
(-3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 290.7
(3)
P 		269.2
(2.4)
P 		264.2
(2.3)
P 		73.7
(-3)
P 		217
B 275.7
(3)
P 		259.3
(2.4)
P 		248
(2)
P 		107
(-3)
P 		169
C 271.4
(0.6)
P 		305.4
(1.2)
P 		400
(3)
P 		78
(-3)
P 		322
avr 279.3
(2.3) 		278
(2.3) 		304.1
(3) 		86.2
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 117.8
(-2.2)
P 		304.5
(3)
P 		160.4
(-1)
P 		104.9
(-2.5)
P 		121.1
(-2.1)
P 		87.1
(-3)
P 		217
B 317.1
(1.5)
P 		379
(3)
P 		229
(-0.7)
P 		133
(-3)
P 		173.8
(-2)
P 		175.8
(-2)
P 		246
C 261.5
(0.8)
P 		348.1
(3)
P 		127.2
(-2.5)
P 		106.8
(-3)
P 		136.1
(-2.3)
P 		138.1
(-2.2)
P 		241
avr 232.1
(0.1) 		343.9
(3) 		172.2
(-1.5) 		114.9
(-3) 		143.7
(-2.2) 		133.7
(-2.5) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173312_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27854
Sequence Type Exemplar sequence
Representative Public ID CEK084B1R NCBI
Target Description CEK084B1R_rc /REP_DB=TREMBL Accession /GB=D71935 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk84b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062018 NCBI Caenorhabditis elegans K08A2.1 (K08A2.1) mRNA, complete cds. 11/11 A 
K08A2.1 ENSEMBL cdna:known chromosome:CEL140:II:2997016:3000626:1 gene:K08A2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027503 8/11 Cross Hyb Matching Probes None
GENEFINDER00000027519 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2999758-3000520(+) 69.32 69.32
Public Domain and Genome References
Gene Title
Ensembl K08A2.1
Entrez Gene 173645 Entrez gene
SwissProt Q9N5J2 EMBL-EBI
WormBase CE23860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39916 Hypothetical protein K08A2.1 [Caenorhabditis elegans] ref|NP_494419.1| K08A2.1 [Caenorhabditis elegans] 0.0
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 3.0E-14
blast NP_494517 F14D2.2 [Caenorhabditis elegans] gb|AAB94958.1| Hypothetical protein F14D2.2 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 4.4E-15
Sequence
Target Sequence 
>C. ELEGANS:173312_S_AT
ggatcggtgtatggaaatcagagtttgagcccacagcgaaacggcaagaaatatcaccca
agcgattcaaagggcaatcgaaaagaacccggcaaaggagcgcatcatcccaaacgcgat
ggaatgtttgctggagacgttctacgccggcacgtacgatcacctggacacgctctacga
agacatgttggtcaggcaacgggccatggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGGTGTATGGAAATCAGAGTT 643 509 48 Antisense
TCAGAGTTTGAGCCCACAGCGAAAC 484 623 65 Antisense
TTGAGCCCACAGCGAAACGGCAAGA 534 685 72 Antisense
AACGGCAAGAAATATCACCCAAGCG 350 137 87 Antisense
CACCCAAGCGATTCAAAGGGCAATC 420 199 102 Antisense
GGCAATCGAAAAGAACCCGGCAAAG 561 511 120 Antisense
GAACCCGGCAAAGGAGCGCATCATC 198 347 132 Antisense
ATGTTTGCTGGAGACGTTCTACGCC 68 47 171 Antisense
CCTGGACACGCTCTACGAAGACATG 147 267 210 Antisense
GACATGTTGGTCAGGCAACGGGCCA 505 369 229 Antisense
TGGTCAGGCAACGGGCCATGGAGCA 261 551 236 Antisense
Sequence Source Affymetrix Proprietary Database