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[173310_at]

Description CEK094E3R_rc /REP_DB=TREMBL Accession /GB=D66265 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk94e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      6grp_highest_nonorm > 35      6grp_total > 72      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3059
1 2 3 4 range
A 1914.5
(1.2)
P 		2502.2
(2.6)
P 		2696.3
(3)
P 		71.3
(-3)
M 		2625
B 1989.6
(1.3)
P 		2776.7
(3)
P 		2365.5
(2.1)
P 		48.8
(-3)
A 		2728
C 2241.1
(1.3)
P 		2890.5
(2.6)
P 		3107.4
(3)
P 		99.8
(-3)
A 		3008
avr 2048.4
(1.5) 		2723.1
(3) 		2723.1
(3) 		73.3
(-3) 		2650

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4459
1 2 3 4 5 6 range
A 1739.4
(-2.7)
P 		3553.4
(-0.3)
P 		5989.3
(3)
P 		5442
(2.3)
P 		3520.7
(-0.3)
P 		1530
(-3)
P 		4459
B 2007.9
(-2.5)
P 		3235.2
(0.7)
P 		4135.2
(3)
P 		4153.5
(3)
P 		4068.5
(2.8)
P 		1794.4
(-3)
P 		2359
C 2366.1
(-2.2)
P 		3120.2
(-0.9)
P 		5281
(2.8)
P 		4233.4
(1)
P 		5374.8
(3)
P 		1888.5
(-3)
P 		3486
avr 2037.8
(-2.5) 		3302.9
(-0.2) 		5135.2
(3) 		4609.6
(2.1) 		4321.3
(1.6) 		1737.6
(-3) 		3398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1073
1 2 3 4 range
A 697.1
(2.9)
P 		543.2
(1.6)
P 		704.9
(3)
P 		10.4
(-3)
M 		695
B 634.5
(2.5)
P 		685.8
(3)
P 		548.1
(1.8)
P 		10.4
(-3)
A 		675
C 741.9
(1.1)
P 		831
(1.6)
P 		1083
(3)
P 		16.8
(-3)
A 		1066
avr 691.2
(2.3) 		686.7
(2.3) 		778.7
(3) 		12.5
(-3) 		766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1419
1 2 3 4 5 6 range
A 320.6
(-3)
P 		1263.8
(2.3)
P 		1304.3
(2.6)
P 		1380.2
(3)
P 		1062.4
(1.2)
P 		372.5
(-2.7)
P 		1060
B 698.7
(-2.8)
P 		1076.8
(-0.5)
P 		1004.2
(-1)
P 		1100.1
(-0.4)
P 		1653
(3)
P 		669.1
(-3)
P 		984
C 877
(-1.7)
P 		952.1
(-1.3)
P 		1344.1
(0.9)
P 		851.3
(-1.8)
P 		1739.2
(3)
P 		632.2
(-3)
P 		1107
avr 632.1
(-2.5) 		1097.6
(0.5) 		1217.5
(1.3) 		1110.5
(0.6) 		1484.9
(3) 		557.9
(-3) 		927
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27785
Sequence Type Exemplar sequence
Representative Public ID CEK094E3R NCBI
Target Description CEK094E3R_rc /REP_DB=TREMBL Accession /GB=D66265 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk94e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170807 NCBI Caenorhabditis elegans Y51F10.7 (Y51F10.7) mRNA, complete cds. 11/11 A 
Y51F10.7 ENSEMBL cdna:known chromosome:CEL140:I:1911691:1913937:-1 gene:Y51F10.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000397 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1911689-1913557(-) 99.73 99.73
Public Domain and Genome References
Gene Title
Ensembl Y51F10.7
Entrez Gene 171761 Entrez gene
SwissProt Q8TA47 EMBL-EBI
WormBase CE30321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740790 Y51F10.7 [Caenorhabditis elegans] gb|AAL77192.1| Hypothetical protein Y51F10.7 [Caenorhabditis elegans] 1.0E-109
blast CAE74397 Hypothetical protein CBG22129 [Caenorhabditis briggsae] 2.0E-85
blast AAK31439 Hypothetical protein C17F4.7 [Caenorhabditis elegans] ref|NP_494487.1| C17F4.7 [Caenorhabditis elegans] 5.0E-84
Sequence
Target Sequence 
>C. ELEGANS:173310_AT
tgcgaatttgcacacaactgcccactcacgtcgggaccactcttcttgattcttccgttg
gatttgagccaattctcggcgattattgacttgattgctgctaataagccgtacgagctg
gaaatccgaatgttcaactacaacgccggtgacacaaagcacgaggagatcgcgtgtgtt
atggctcaagttgagttgtcttaagcatgaatgctccgtccgttcgttcgggaattgtat
gtgtacatcgnagaagaagaaganacaaaatgtcatgtgtgaaactacgtgtcgccgata
t

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGAATTTGCACACAACTGCCCAC 97 583 29 Antisense
TCTTCTTGATTCTTCCGTTGGATTT 368 617 69 Antisense
GGATTTGAGCCAATTCTCGGCGATT 468 509 88 Antisense
GGCGATTATTGACTTGATTGCTGCT 708 541 106 Antisense
GATTGCTGCTAATAAGCCGTACGAG 518 429 121 Antisense
TAAGCCGTACGAGCTGGAAATCCGA 592 627 133 Antisense
GAGCTGGAAATCCGAATGTTCAACT 177 387 143 Antisense
GTTGAGTTGTCTTAAGCATGAATGC 695 435 218 Antisense
TTAAGCATGAATGCTCCGTCCGTTC 633 681 229 Antisense
CGTCCGTTCGTTCGGGAATTGTATG 566 237 245 Antisense
GTGTGAAACTACGTGTCGCCGATAT 245 485 305 Antisense
Sequence Source Affymetrix Proprietary Database