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[173308_at]

Description CEK097G2R_rc /REP_DB=TREMBL Accession /GB=D72364 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk97g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 08      6grp_total > 52      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11738
1 2 3 4 range
A 15773.6
(-0.1)
P 		20711
(3)
P 		20281.7
(2.7)
P 		11206.1
(-3)
P 		9505
B 16840.1
(0)
P 		21735.6
(2.5)
P 		22647
(3)
P 		11015.3
(-3)
P 		11632
C 16108.9
(1)
P 		18757.9
(3)
P 		17343.2
(1.9)
P 		10909.3
(-3)
P 		7849
avr 16240.9
(0.3) 		20401.5
(3) 		20090.6
(2.8) 		11043.6
(-3) 		9358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12845
1 2 3 4 5 6 range
A 17722.1
(-1.1)
P 		18630.8
(-0.4)
P 		22684.3
(3)
P 		19475.3
(0.3)
P 		15489.9
(-3)
P 		15463.4
(-3)
P 		7221
B 15260.7
(-2)
P 		17116.4
(-1.1)
P 		25957.4
(3)
P 		18128.4
(-0.7)
P 		13936.4
(-2.6)
P 		13112.5
(-3)
P 		12845
C 13859.6
(-3)
P 		16616.5
(-0.8)
P 		21502.6
(3)
P 		20738.9
(2.4)
P 		14722.4
(-2.3)
P 		14776.4
(-2.3)
P 		7643
avr 15614.1
(-2.2) 		17454.6
(-1) 		23381.4
(3) 		19447.5
(0.4) 		14716.2
(-2.8) 		14450.8
(-3) 		8931
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4404
1 2 3 4 range
A 5743.2
(3)
P 		4495.8
(1.2)
P 		5302
(2.4)
P 		1640.4
(-3)
P 		4103
B 5370.2
(3)
P 		5368.2
(3)
P 		5247.8
(2.8)
P 		2347.4
(-3)
P 		3023
C 5332.5
(2)
P 		5393
(2.1)
P 		6044.6
(3)
P 		1839.5
(-3)
P 		4205
avr 5482
(2.9) 		5085.7
(2.3) 		5531.5
(3) 		1942.4
(-3) 		3589

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3359
1 2 3 4 5 6 range
A 3266.9
(-3)
P 		6626
(3)
P 		4940.2
(-0)
P 		4939.4
(-0)
P 		4674.2
(-0.5)
P 		3764.9
(-2.1)
P 		3359
B 5310
(-1)
P 		5697.3
(0.6)
P 		6303.2
(3)
P 		4801.6
(-3)
P 		5662.2
(0.4)
P 		4889.6
(-2.6)
P 		1502
C 5137.1
(1.5)
P 		5070.2
(1.1)
P 		5472.8
(3)
P 		4170.6
(-3)
P 		4764
(-0.3)
P 		4946.5
(0.6)
P 		1302
avr 4571.3
(-2.8) 		5797.8
(3) 		5572.1
(1.9) 		4637.2
(-2.5) 		5033.5
(-0.6) 		4533.7
(-3) 		1264
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27882
Sequence Type Exemplar sequence
Representative Public ID CEK097G2R NCBI
Target Description CEK097G2R_rc /REP_DB=TREMBL Accession /GB=D72364 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk97g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070155 NCBI Caenorhabditis elegans Y67H2A.5 (Y67H2A.5) mRNA, complete cds. 11/11 None
SNAP00000010784 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13300157:13300594:1 9/11 None
GENEFINDER00000010799 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13300157:13300594:1 9/11 None
Y67H2A.5 ENSEMBL cdna:known chromosome:CEL140:IV:13300157:13300594:1 gene:Y67H2A.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13300316-13300678(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67H2A.5
Entrez Gene 178288 Entrez gene
SwissProt Q95PZ1 EMBL-EBI
WormBase CE28376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC44306 Hypothetical protein Y67H2A.5 [Caenorhabditis elegans] ref|NP_502556.1| Y67H2A.5 [Caenorhabditis elegans] 7.0E-79
blast CAE58626 Hypothetical protein CBG01794 [Caenorhabditis briggsae] 7.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502556.1 1 112-134
Y67H2A.5 1 112-134
SNAP00000010784 1 112-134
GENEFINDER00000010799 1 112-134
Sequence
Target Sequence 
>C. ELEGANS:173308_AT
tccttccacgtctgccagagggaaccaaatgcggaaaccttgtcatgggaaagtacggac
tctacgatccaatcctcaagaaaagagttgatacctacgccaatgctcttctcgaaggaa
agaagtccgaagaggctggaccattcgatgtcgctgtcagcaagatcgccaaggtccttt
cctacatctgctttgtcatcgccatctacaacctcatctcgttggtcaacggaactccac
ttccaccacttagccacgtcaaggctccaggatcctaaataatttccactcgattgcatt
atctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCCACGTCTGCCAGAGGGAAC 573 591 19 Antisense
AGTACGGACTCTACGATCCAATCCT 173 63 70 Antisense
AGAGTTGATACCTACGCCAATGCTC 373 67 102 Antisense
ACGCCAATGCTCTTCTCGAAGGAAA 225 91 115 Antisense
CTGGACCATTCGATGTCGCTGTCAG 14 241 154 Antisense
GCTGTCAGCAAGATCGCCAAGGTCC 343 295 171 Antisense
CCATCTACAACCTCATCTCGTTGGT 452 271 220 Antisense
CTCGTTGGTCAACGGAACTCCACTT 275 209 236 Antisense
TCCACCACTTAGCCACGTCAAGGCT 161 589 260 Antisense
ACGTCAAGGCTCCAGGATCCTAAAT 173 95 274 Antisense
ATTTCCACTCGATTGCATTATCTCT 323 17 300 Antisense
Sequence Source Affymetrix Proprietary Database