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[173307_s_at] Thrombospondin type 1 domain

Description CEC4414_rc /REP_DB=TREMBL Accession /GB=C11441 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk179c11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_total > 07      4grp_total > 46      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 322.8
(3)
P 		284
(1.7)
P 		142.5
(-3)
P 		254.5
(0.7)
P 		180
B 284.1
(3)
P 		211
(-2.8)
P 		216.8
(-2.4)
P 		208.8
(-3)
P 		75
C 282
(3)
P 		159.9
(-1.4)
P 		221.2
(0.8)
P 		117
(-3)
P 		165
avr 296.3
(3) 		218.3
(-1.5) 		193.5
(-3) 		193.4
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 233.1
(3)
P 		182.2
(1.4)
P 		148
(0.4)
P 		36.4
(-3)
A 		135.4
(0)
P 		87
(-1.5)
P 		197
B 252.7
(3)
P 		156.1
(-0.5)
P 		181
(0.4)
P 		113.3
(-2)
P 		86.3
(-3)
P 		142.5
(-1)
P 		166
C 216
(3)
P 		173.3
(1.1)
P 		132
(-0.7)
P 		80.9
(-3)
A 		87.7
(-2.7)
P 		145.2
(-0.1)
P 		135
avr 233.9
(3) 		170.5
(0.6) 		153.7
(-0.1) 		76.9
(-3) 		103.1
(-2) 		124.9
(-1.2) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 117.5
(3)
P 		61.6
(-1.2)
P 		37.3
(-3)
P 		37.3
(-3)
P 		80
B 90.6
(3)
P 		52.1
(-2)
P 		50.2
(-2.3)
P 		44.5
(-3)
P 		46
C 93.3
(3)
P 		46
(-0.9)
P 		77.1
(1.7)
P 		19.7
(-3)
P 		74
avr 100.5
(3) 		53.2
(-1.3) 		54.9
(-1.1) 		33.8
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 43
(0.6)
P 		64.8
(3)
P 		32.2
(-0.5)
P 		9.2
(-3)
A 		40.9
(0.4)
P 		21.2
(-1.7)
P 		56
B 87.9
(3)
P 		52
(-0.7)
P 		43.9
(-1.6)
P 		30
(-3)
P 		35.1
(-2.5)
P 		53.1
(-0.6)
P 		58
C 80.1
(3)
P 		52.9
(0.4)
P 		33.6
(-1.4)
P 		16.3
(-3)
A 		28.4
(-1.9)
P 		48.6
(0)
P 		64
avr 70.3
(3) 		56.6
(1.4) 		36.6
(-0.9) 		18.5
(-3) 		34.8
(-1.1) 		41
(-0.4) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173307_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27636
Sequence Type Exemplar sequence
Representative Public ID CEC4414 NCBI
Target Description CEC4414_rc /REP_DB=TREMBL Accession /GB=C11441 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk179c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073400 NCBI Caenorhabditis elegans F53B7.5 (F53B7.5) mRNA, complete cds. 11/11 A 
SNAP00000033903 ENSEMBL cdna:SNAP chromosome:CEL140:V:10970558:10973748:-1 11/11 None
GENEFINDER00000033915 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10970558:10973692:-1 11/11 None
F53B7.5 ENSEMBL cdna:known chromosome:CEL140:V:10972987:10982625:-1 gene:F53B7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10973098-10973512(-) 73.7 73.7
Public Domain and Genome References
Gene Title Thrombospondin type 1 domain
Ensembl F53B7.5
Entrez Gene 179523 Entrez gene
SwissProt Q19522 EMBL-EBI
WormBase CE05924 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96654 Hypothetical protein F53B7.5 [Caenorhabditis elegans] emb|CAA96634.1| Hypothetical protein F53B7.5 [Caenorhabditis elegans] ref|NP_505801.1| F53B7.5 [Caenorhabditis elegans] 0.0
blast CAE75138 Hypothetical protein CBG23067 [Caenorhabditis briggsae] 0.0
blast CAE75138 Hypothetical protein CBG23067 [Caenorhabditis briggsae] 5.0E-68
blast CAE75138 Hypothetical protein CBG23067 [Caenorhabditis briggsae] 2.0E-33
blast CAA96654 Hypothetical protein F53B7.5 [Caenorhabditis elegans] emb|CAA96634.1| Hypothetical protein F53B7.5 [Caenorhabditis elegans] ref|NP_505801.1| F53B7.5 [Caenorhabditis elegans] 1.0E-30
blast CAA96654 Hypothetical protein F53B7.5 [Caenorhabditis elegans] emb|CAA96634.1| Hypothetical protein F53B7.5 [Caenorhabditis elegans] ref|NP_505801.1| F53B7.5 [Caenorhabditis elegans] 9.0E-30
blast CAE69706 Hypothetical protein CBG15974 [Caenorhabditis briggsae] 5.0E-23
blast ZP_00421276 Haemagluttinin motif:Hep_Hag [Burkholderia vietnamiensis G4] gb|EAM32254.1| Haemagluttinin motif:Hep_Hag [Burkholderia vietnamiensis G4] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.7E-6
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.5E-28
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.1E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.6E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.1E-39
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.6E-32
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 2.0E-38
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.4E-34
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 3.5E-35
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.6E-33
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.1E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 7.9E-27
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.7E-30
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 5.1E-23
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.3E-36
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 8.2E-31
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.7E-6
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 7.4E-18
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.7E-6
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 7.4E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033915 2 137-159,164-186
Sequence
Target Sequence 
>C. ELEGANS:173307_S_AT
attgttcgacttcaacgtggaacgcatggcaagaatggtccacgtgtacagaaacatgtg
gatcatgtggaacacaacaacggttccgaagttgcaataaaccagttgacacgtgtacat
gctcaggatctgcattcgagaaggagtactgtaacctggccgtttgcaaatttccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTCGACTTCAACGTGGAACGC 314 5 97 Antisense
CGTGGAACGCATGGCAAGAATGGTC 285 243 112 Antisense
AGAATGGTCCACGTGTACAGAAACA 568 75 128 Antisense
GGATCATGTGGAACACAACAACGGT 628 511 156 Antisense
ACAACAACGGTTCCGAAGTTGCAAT 97 97 170 Antisense
AATAAACCAGTTGACACGTGTACAT 664 169 192 Antisense
GACACGTGTACATGCTCAGGATCTG 650 367 204 Antisense
GTACATGCTCAGGATCTGCATTCGA 630 459 211 Antisense
GGATCTGCATTCGAGAAGGAGTACT 500 511 222 Antisense
GAAGGAGTACTGTAACCTGGCCGTT 172 335 236 Antisense
ACCTGGCCGTTTGCAAATTTCCACT 517 81 250 Antisense
Sequence Source Affymetrix Proprietary Database