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[173303_s_at]

Description CEK083F8R_rc /REP_DB=TREMBL Accession /GB=D71911 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk83f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 44      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 436.7
(1.4)
P 		475.4
(3)
P 		392.8
(-0.5)
P 		334
(-3)
P 		141
B 354.5
(-1.8)
P 		464.7
(3)
P 		398
(0.1)
P 		325.6
(-3)
P 		139
C 526.9
(2.1)
P 		552.9
(3)
P 		433
(-1.1)
P 		379.1
(-3)
P 		174
avr 439.4
(0.7) 		497.7
(3) 		407.9
(-0.6) 		346.2
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 248.9
(-2.8)
P 		397.9
(1.8)
P 		437.3
(3)
P 		251.8
(-2.7)
P 		243.4
(-3)
P 		339.6
(-0)
P 		194
B 272.9
(-0.8)
P 		297.6
(0.2)
P 		316.8
(1)
P 		366.3
(3)
P 		243.8
(-1.9)
P 		217.4
(-3)
P 		149
C 364.7
(1)
P 		409.8
(3)
P 		301.6
(-1.9)
P 		277.5
(-3)
P 		318.6
(-1.1)
P 		310.6
(-1.5)
P 		132
avr 295.5
(-1.4) 		368.4
(3) 		351.9
(2) 		298.5
(-1.2) 		268.6
(-3) 		289.2
(-1.8) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 159
(3)
P 		103.2
(-0)
P 		102.7
(-0.1)
P 		48.9
(-3)
P 		110
B 113
(2.8)
P 		114.8
(3)
P 		92.2
(0)
P 		69.4
(-3)
P 		45
C 174.4
(3)
P 		159
(2.2)
P 		150.9
(1.7)
P 		63.9
(-3)
P 		111
avr 148.8
(3) 		125.7
(1.4) 		115.3
(0.7) 		60.7
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 45.9
(-3)
P 		141.5
(3)
P 		95.2
(0.1)
P 		63.9
(-1.9)
P 		73.4
(-1.3)
P 		82.7
(-0.7)
P 		96
B 94.9
(1.9)
P 		99.1
(3)
P 		76.9
(-3)
P 		97
(2.4)
P 		99.1
(3)
P 		81.1
(-1.9)
P 		22
C 135.2
(3)
P 		125.1
(2.2)
P 		76.8
(-1.4)
P 		55.8
(-3)
P 		103.1
(0.6)
P 		104
(0.6)
P 		79
avr 92
(-0.6) 		121.9
(3) 		83
(-1.7) 		72.2
(-3) 		91.9
(-0.6) 		89.3
(-0.9) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173303_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27682
Sequence Type Exemplar sequence
Representative Public ID CEK083F8R NCBI
Target Description CEK083F8R_rc /REP_DB=TREMBL Accession /GB=D71911 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk83f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061565 NCBI Caenorhabditis elegans Y51H7C.6a (Y51H7C.6) mRNA, complete cds. 11/11 A 
SNAP00000035525 ENSEMBL cdna:SNAP chromosome:CEL140:II:1403331:1408977:1 11/11 None
GENEFINDER00000035542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1403331:1408977:1 11/11 None
Y51H7C.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:1403327:1409124:1 gene:Y51H7C.6 11/11 A 
Y51H7C.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:1403350:1409124:1 gene:Y51H7C.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173518 2 1 NM_061565 173303_s_at (11), 176835_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1408321-1409099(+) 97.71 97.71
Public Domain and Genome References
Ensembl Y51H7C.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39338 Hypothetical protein Y51H7C.6a [Caenorhabditis elegans] ref|NP_493966.1| Y51H7C.6a [Caenorhabditis elegans] sp|Q95XZ0|COG4_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE62968 Hypothetical protein CBG07185 [Caenorhabditis briggsae] 0.0
blast AAK39339 Hypothetical protein Y51H7C.6b [Caenorhabditis elegans] ref|NP_493967.1| Y51H7C.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173303_S_AT
caaatgtggctggatggtcggcgcgggagaaagttggacggctgggacagatcgtctccc
tcctcaacgtggaaactatcgacgaagcaatggaggtttggcataattcaaaagcgatga
cgtcatcggcgacaattcgaactcttactctaccagaagtcagaaaagttctcgcgttac
gagccgacttcccaactgtcgctattaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATGTGGCTGGATGGTCGGCGCG 609 191 19 Antisense
CTGGATGGTCGGCGCGGGAGAAAGT 612 239 28 Antisense
GCGCGGGAGAAAGTTGGACGGCTGG 116 289 39 Antisense
TGGACGGCTGGGACAGATCGTCTCC 244 549 53 Antisense
TCTCCCTCCTCAACGTGGAAACTAT 96 609 73 Antisense
GACGAAGCAATGGAGGTTTGGCATA 64 381 99 Antisense
GCGACAATTCGAACTCTTACTCTAC 202 289 147 Antisense
GAACTCTTACTCTACCAGAAGTCAG 600 349 157 Antisense
GAAGTCAGAAAAGTTCTCGCGTTAC 192 337 174 Antisense
AAGTTCTCGCGTTACGAGCCGACTT 256 157 184 Antisense
ACTTCCCAACTGTCGCTATTAAATC 506 103 205 Antisense
Sequence Source Affymetrix Proprietary Database