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[173301_s_at]

Description CEK011C5R_rc /REP_DB=TREMBL Accession /GB=D26634 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk11c5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 18      6grp_total > 64      4grp_total > 13      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10333
1 2 3 4 range
A 15515.3
(-0.1)
P 		10541.3
(-3)
P 		10898.8
(-2.8)
P 		20874.1
(3)
P 		10333
B 15893
(0.2)
P 		12913.2
(-2.4)
P 		12169.7
(-3)
P 		19256.9
(3)
P 		7087
C 15767.7
(0.3)
P 		11998.2
(-2.1)
P 		10601.1
(-3)
P 		19950.2
(3)
P 		9349
avr 15725.3
(0.1) 		11817.6
(-2.6) 		11223.2
(-3) 		20027.1
(3) 		8804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9144
1 2 3 4 5 6 range
A 14577.4
(-2.1)
P 		13407.2
(-3)
P 		15569.3
(-1.3)
P 		16461.3
(-0.6)
P 		14073.8
(-2.5)
P 		20992.9
(3)
P 		7586
B 13317.9
(-1.6)
P 		12006.5
(-3)
P 		17711.8
(3)
P 		16475.7
(1.7)
P 		12648.7
(-2.3)
P 		15085.5
(0.2)
P 		5705
C 13916.7
(-1.1)
P 		11849
(-3)
P 		18286
(3)
P 		15592.9
(0.5)
P 		15906.8
(0.8)
P 		15412.7
(0.3)
P 		6437
avr 13937.3
(-1.1) 		12420.9
(-3) 		17189
(3) 		16176.6
(1.7) 		14209.8
(-0.7) 		17163.7
(3) 		4768
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3361
1 2 3 4 range
A 5649.1
(3)
P 		2288.2
(-3)
P 		2849.2
(-2)
P 		3055.6
(-1.6)
P 		3361
B 5068.2
(3)
P 		3189.3
(-2)
P 		2820
(-3)
P 		4103.7
(0.4)
P 		2248
C 5219.6
(3)
P 		3449.6
(-2.7)
P 		3694.8
(-1.9)
P 		3363.9
(-3)
P 		1856
avr 5312.3
(3) 		2975.7
(-3) 		3121.3
(-2.6) 		3507.7
(-1.6) 		2337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2938
1 2 3 4 5 6 range
A 2687.2
(-3)
P 		4768.3
(2.2)
P 		3390.7
(-1.3)
P 		4175
(0.7)
P 		4246.9
(0.9)
P 		5111.1
(3)
P 		2424
B 4634
(-0.7)
P 		3996.5
(-3)
P 		4301
(-1.9)
P 		4363.8
(-1.6)
P 		5139
(1.2)
P 		5625.3
(3)
P 		1629
C 5158.3
(3)
P 		3615.5
(-1.6)
P 		4654.1
(1.5)
P 		3135.7
(-3)
P 		5147.2
(3)
P 		5159.5
(3)
P 		2024
avr 4159.8
(-1.9) 		4126.8
(-2) 		4115.3
(-2) 		3891.5
(-3) 		4844.4
(1.1) 		5298.6
(3) 		1407
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173301_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27675
Sequence Type Exemplar sequence
Representative Public ID CEK011C5R NCBI
Target Description CEK011C5R_rc /REP_DB=TREMBL Accession /GB=D26634 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk11c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070905(11), NM_001026196(11), U23159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070905 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-7) (gei-7) mRNA, complete cds. 11/11 A 
NM_001026196 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-7) (gei-7) mRNA, complete cds. 11/11 None
U23159 NCBI Caenorhabditis elegans bifunctional glyoxylate cycle protein, complete cds. 11/11 A 
SNAP00000009755 ENSEMBL cdna:SNAP chromosome:CEL140:V:724287:727787:-1 11/11 None
C05E4.9a.3 ENSEMBL cdna:known chromosome:CEL140:V:724037:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9a.4 ENSEMBL cdna:known chromosome:CEL140:V:724040:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9b.1 ENSEMBL cdna:known chromosome:CEL140:V:724040:727933:-1 gene:C05E4.9 11/11 A 
C05E4.9b.2 ENSEMBL cdna:known chromosome:CEL140:V:724040:728027:-1 gene:C05E4.9 11/11 A 
C05E4.9a.2 ENSEMBL cdna:known chromosome:CEL140:V:724101:727787:-1 gene:C05E4.9 11/11 A 
C05E4.9a.1 ENSEMBL cdna:known chromosome:CEL140:V:724154:727811:-1 gene:C05E4.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009773 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:724190-724561(-) 87.68 87.68
Public Domain and Genome References
Ensembl C05E4.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71278 Gex interacting protein protein 7, isoform a [Caenorhabditis elegans] ref|NP_503306.1| GEX Interacting protein family member (gei-7) [Caenorhabditis elegans] sp|Q10663|GCP_CAEEL Bifunctional glyoxylate cycle protein (GEX interacting protein 7) [Includes: Isocitrate lyase (Isocitrase) (Isocitratase) (ICL); Malate synthase ] 0.0
blast AAA85857 bifunctional glyoxylate cycle protein 0.0
blast AAN84883 Gex interacting protein protein 7, isoform b [Caenorhabditis elegans] ref|NP_001021367.1| GEX Interacting protein family member (gei-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR000918 EMBL-EBI Isocitrate lyase and phosphorylmutase 1.0E-126
Pfam IPR001465 EMBL-EBI Malate synthase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173301_S_AT
gctctggcaatggctccatcatgatgctaagcttgaggacggtcgcactattgacgccgg
acttgtcaagcaaacgattgccgccgagaccgagcgtcgtctcatccgagccggatcagt
tgtcaaccgaatcccagaggctgccgacttgctcgagaagtttgtcaccgaggagaagat
gagcgacttcttgaccaccgacgcttacgacaggcttgtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTGGCAATGGCTCCATCATGAT 632 299 96 Antisense
GGCTCCATCATGATGCTAAGCTTGA 319 539 107 Antisense
GCTTGAGGACGGTCGCACTATTGAC 17 265 126 Antisense
GCACTATTGACGCCGGACTTGTCAA 627 315 140 Antisense
GACGCCGGACTTGTCAAGCAAACGA 531 379 148 Antisense
TCAAGCAAACGATTGCCGCCGAGAC 695 631 161 Antisense
CATCCGAGCCGGATCAGTTGTCAAC 523 209 198 Antisense
AGTTGTCAACCGAATCCCAGAGGCT 108 63 213 Antisense
GACTTGCTCGAGAAGTTTGTCACCG 442 371 241 Antisense
GGAGAAGATGAGCGACTTCTTGACC 631 519 267 Antisense
CGACGCTTACGACAGGCTTGTCTCT 607 249 294 Antisense
Sequence Source Affymetrix Proprietary Database