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[173298_at]

Description CEC3733_rc /REP_DB=TREMBL Accession /GB=C10373 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 28      6grp_total > 42      4grp_total > 0      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6372
1 2 3 4 range
A 10103.1
(1.3)
P 		5578.5
(-3)
P 		9375.9
(0.6)
P 		11950.4
(3)
P 		6372
B 9453.3
(-1.7)
P 		9862.9
(-0.2)
P 		10789.9
(3)
P 		9078.2
(-3)
P 		1712
C 8260.9
(-3)
P 		9572
(-0)
P 		9765.1
(0.4)
P 		10898.9
(3)
P 		2638
avr 9272.4
(-0.6) 		8337.8
(-3) 		9977
(1.3) 		10642.5
(3) 		2305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4520
1 2 3 4 5 6 range
A 9577.9
(-2.1)
P 		9572.5
(-2.1)
P 		13322.6
(3)
P 		9433.4
(-2.3)
P 		9965.5
(-1.6)
P 		8911.6
(-3)
P 		4411
B 11063.3
(2.4)
P 		10782.8
(1.5)
P 		11269.9
(3)
P 		10562
(0.9)
P 		9551.9
(-2.2)
P 		9294.2
(-3)
P 		1976
C 10111.7
(0.9)
P 		10830.9
(3)
P 		9207.4
(-1.8)
P 		10480.7
(2)
P 		8802.3
(-3)
P 		9039.6
(-2.3)
P 		2029
avr 10251
(0.2) 		10395.4
(0.6) 		11266.6
(3) 		10158.7
(-0) 		9439.9
(-2) 		9081.8
(-3) 		2185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2468
1 2 3 4 range
A 3678.6
(3)
P 		1211
(-3)
P 		2451.1
(0)
P 		1749.3
(-1.7)
P 		2468
B 3014.6
(3)
P 		2435.9
(-0.2)
P 		2500.3
(0.1)
P 		1934.6
(-3)
P 		1080
C 2734.6
(0.4)
P 		2752
(0.5)
P 		3403.5
(3)
P 		1837.7
(-3)
P 		1566
avr 3142.6
(3) 		2133
(-1.7) 		2785
(1.4) 		1840.5
(-3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2115
1 2 3 4 5 6 range
A 1765.6
(-3)
P 		3404.5
(3)
P 		2901.4
(1.2)
P 		2392.5
(-0.7)
P 		3007.2
(1.5)
P 		2169.7
(-1.5)
P 		1639
B 3849.5
(2.8)
P 		3589.1
(1.5)
P 		2736.7
(-3)
P 		2797.5
(-2.7)
P 		3880.8
(3)
P 		3465.8
(0.8)
P 		1144
C 3748
(3)
P 		3304.8
(1.4)
P 		2343.4
(-2.1)
P 		2107.7
(-3)
P 		2848.3
(-0.3)
P 		3026.1
(0.4)
P 		1640
avr 3121
(1.1) 		3432.8
(3) 		2660.5
(-1.6) 		2432.6
(-3) 		3245.4
(1.9) 		2887.2
(-0.3) 		1000
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27974
Sequence Type Exemplar sequence
Representative Public ID CEC3733 NCBI
Target Description CEC3733_rc /REP_DB=TREMBL Accession /GB=C10373 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC3733
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC3733 CEC3733_rc /REP_DB=TREMBL Accession /GB=C10373 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk145b11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:5129-5554(+) 86.72 90.58
Sequence
Target Sequence 
>C. ELEGANS:173298_AT
gtttgttttagacctgagtacttaggtaaagatgnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnttgatttacccgtttaatttaggtgatgcagagatgtttattgaa
gctgaccctataatgaggccagttcatattgttccagagtgagannnnnnatttgcttat
gcaattttgcgtgctattccaaataaagtcttaggggtaattgctttattaataaggatc
gtaacattttatttctttgctttagttaataattatacctcttgtttaaccannnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnntcatctactattttaagatgactaggtcaatgc
actgtagaagacccttttac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTTTTAGACCTGAGTACTTAG 153 451 29 Antisense
TTACCCGTTTAATTTAGGTGATGCA 684 429 109 Antisense
GAGATGTTTATTGAAGCTGACCCTA 545 395 134 Antisense
GCTGACCCTATAATGAGGCCAGTTC 631 295 149 Antisense
ATGAGGCCAGTTCATATTGTTCCAG 155 45 161 Antisense
TATGCAATTTTGCGTGCTATTCCAA 312 657 206 Antisense
GGATCGTAACATTTTATTTCTTTGC 91 509 264 Antisense
TAACATTTTATTTCTTTGCTTTAGT 404 639 270 Antisense
TAGTTAATAATTATACCTCTTGTTT 416 633 291 Antisense
GATGACTAGGTCAATGCACTGTAGA 97 413 372 Antisense
AATGCACTGTAGAAGACCCTTTTAC 367 165 384 Antisense
Sequence Source Affymetrix Proprietary Database