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[173295_s_at]

Description CEK074FYR_rc /REP_DB=TREMBL Accession /GB=D71391 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk74f11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 75      6grp_total > 08      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 858.5
(3)
P 		764.3
(0.6)
P 		627
(-3)
P 		829.2
(2.2)
P 		232
B 1041
(3)
P 		689.1
(-2.7)
P 		673.1
(-3)
P 		798.2
(-1)
P 		368
C 932.1
(3)
P 		861.4
(1.6)
P 		685.1
(-1.8)
P 		623.7
(-3)
P 		308
avr 943.9
(3) 		771.6
(-0.7) 		661.7
(-3) 		750.4
(-1.1) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 996.9
(1)
P 		768.3
(-2.4)
P 		1130.7
(3)
P 		804.6
(-1.9)
P 		859.7
(-1.1)
P 		731.3
(-3)
P 		399
B 1189.8
(3)
P 		1009.6
(-0.5)
P 		1114.2
(1.5)
P 		888.2
(-2.8)
P 		879.9
(-3)
P 		1017.5
(-0.3)
P 		310
C 1133.1
(3)
P 		934.4
(-0.4)
P 		785.5
(-3)
P 		984.6
(0.4)
P 		816.2
(-2.5)
P 		785.3
(-3)
P 		348
avr 1106.6
(3) 		904.1
(-1.6) 		1010.1
(0.8) 		892.5
(-1.9) 		851.9
(-2.8) 		844.7
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 312.6
(3)
P 		165.9
(-1.6)
P 		163.9
(-1.7)
P 		121.4
(-3)
P 		191
B 332
(3)
P 		170.2
(-2.5)
P 		156
(-3)
P 		170.1
(-2.5)
P 		176
C 308.5
(3)
P 		247.6
(1.2)
P 		238.8
(0.9)
P 		105.2
(-3)
P 		203
avr 317.7
(3) 		194.6
(-1) 		186.2
(-1.3) 		132.2
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 183.8
(-2.6)
P 		273.2
(3)
P 		246.2
(1.3)
P 		204.1
(-1.4)
P 		259.4
(2.1)
P 		178
(-3)
P 		95
B 414
(3)
P 		336.1
(0.4)
P 		270.6
(-1.8)
P 		235.3
(-3)
P 		357.5
(1.1)
P 		379.4
(1.8)
P 		179
C 420
(3)
P 		285.1
(-0.6)
P 		199.9
(-2.9)
P 		198
(-3)
P 		264.1
(-1.2)
P 		262.9
(-1.2)
P 		222
avr 339.3
(3) 		298.1
(1.1) 		238.9
(-1.8) 		212.5
(-3) 		293.7
(0.8) 		273.4
(-0.1) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173295_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27738
Sequence Type Exemplar sequence
Representative Public ID CEK074FYR NCBI
Target Description CEK074FYR_rc /REP_DB=TREMBL Accession /GB=D71391 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk74f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061977(11), NM_182220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061977 NCBI Caenorhabditis elegans K12H6.6a (K12H6.6) mRNA, complete cds. 11/11 A 
NM_182220 NCBI Caenorhabditis elegans K12H6.6b (K12H6.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000024522 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2828762:2831219:-1 11/11 None
K12H6.6a ENSEMBL cdna:known chromosome:CEL140:II:2828582:2831232:-1 gene:K12H6.6 11/11 A 
K12H6.6b ENSEMBL cdna:known chromosome:CEL140:II:2828597:2831219:-1 gene:K12H6.6 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024515 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2828595-2829541(-) 99.43 99.43
Public Domain and Genome References
Ensembl K12H6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_872020 K12H6.6b [Caenorhabditis elegans] gb|AAO38617.1| Hypothetical protein K12H6.6b [Caenorhabditis elegans] 0.0
blast NP_494378 K12H6.6a [Caenorhabditis elegans] gb|AAF39936.1| Hypothetical protein K12H6.6a [Caenorhabditis elegans] 1.0E-168
blast NP_872020 K12H6.6b [Caenorhabditis elegans] gb|AAO38617.1| Hypothetical protein K12H6.6b [Caenorhabditis elegans] 1.0E-161
blast NP_494378 K12H6.6a [Caenorhabditis elegans] gb|AAF39936.1| Hypothetical protein K12H6.6a [Caenorhabditis elegans] 1.0E-161
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494378.1 4 16-38,164-186,207-229,239-261
NP_872020.1 4 16-38,164-186,207-229,239-261
K12H6.6a 4 16-38,164-186,207-229,239-261
K12H6.6b 4 16-38,164-186,207-229,239-261
GENEFINDER00000024522 4 16-38,164-186,207-229,239-261
Sequence
Target Sequence 
>C. ELEGANS:173295_S_AT
cctcgccagctcgaatatggtgcttacctaccgtctgttggctgccgatggattttgtgg
cgcaagccgtcagcgacaagtcccagctagagttgaaacagaagttnnnnnggagcatca
gaatttggtgaagcaagtcgtgcagggctccga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCGCCAGCTCGAATATGGTGCTT 509 267 20 Antisense
GCCAGCTCGAATATGGTGCTTACCT 232 279 24 Antisense
GCTCGAATATGGTGCTTACCTACCG 692 297 28 Antisense
AATATGGTGCTTACCTACCGTCTGT 374 173 33 Antisense
TACCGTCTGTTGGCTGCCGATGGAT 530 649 48 Antisense
CCGTCTGTTGGCTGCCGATGGATTT 539 263 50 Antisense
CTGTTGGCTGCCGATGGATTTTGTG 304 239 54 Antisense
GATGGATTTTGTGGCGCAAGCCGTC 688 405 66 Antisense
GGAGCATCAGAATTTGGTGAAGCAA 265 521 131 Antisense
GGTGAAGCAAGTCGTGCAGGGCTCC 262 499 146 Antisense
TGAAGCAAGTCGTGCAGGGCTCCGA 286 575 148 Antisense
Sequence Source Affymetrix Proprietary Database