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[173293_at]

Description CEK109H6R_rc /REP_DB=TREMBL Accession /GB=D72834 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk109h6 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 5.9
(-3)
A 		8.2
(-1.9)
A 		8.4
(-1.8)
A 		17.9
(3)
A 		12
B 5.8
(-3)
A 		35.3
(1)
A 		6.1
(-3)
A 		50.5
(3)
A 		45
C 4.1
(-3)
A 		13.3
(-1.1)
A 		8
(-2.2)
A 		32.9
(3)
A 		29
avr 5.3
(-3) 		18.9
(-0.1) 		7.5
(-2.5) 		33.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56
(3)
A 		11.4
(-2.2)
A 		5.3
(-3)
A 		6.3
(-2.8)
A 		5
(-3)
A 		14.6
(-1.9)
A 		51
B 4.8
(-3)
A 		8.9
(-2.4)
A 		50.4
(3)
A 		7.2
(-2.6)
A 		4.5
(-3)
A 		4.5
(-3)
A 		46
C 23.3
(-0.9)
A 		5.3
(-2.9)
A 		4.6
(-3)
A 		58.3
(3)
A 		6.8
(-2.8)
A 		32.6
(0.1)
A 		54
avr 28
(3) 		8.5
(-2.2) 		20.1
(0.9) 		23.9
(1.9) 		5.4
(-3) 		17.2
(0.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.2
(0)
A 		1.8
(-3)
A 		2.2
(0)
A 		2.6
(3)
A 		1
B 1.8
(-2.7)
A 		8.7
(1.7)
A 		1.4
(-3)
A 		10.8
(3)
A 		9
C 1.4
(-3)
A 		3.8
(0.5)
A 		2.8
(-1)
A 		5.5
(3)
A 		4
avr 1.8
(-3) 		4.8
(1) 		2.1
(-2.6) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.3
(3)
A 		4.1
(-1.1)
A 		1.2
(-3)
A 		1.6
(-2.7)
A 		1.5
(-2.8)
A 		3.5
(-1.5)
A 		9
B 1.7
(-3)
A 		3
(-2.3)
A 		12.2
(3)
A 		1.9
(-2.9)
A 		1.8
(-2.9)
A 		1.7
(-3)
A 		11
C 8.6
(1.2)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		11.7
(3)
A 		2.2
(-2.4)
A 		10.9
(2.5)
A 		11
avr 6.9
(3) 		2.9
(-1.7) 		4.9
(0.6) 		5.1
(0.9) 		1.8
(-3) 		5.4
(1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28044
Sequence Type Exemplar sequence
Representative Public ID CEK109H6R NCBI
Target Description CEK109H6R_rc /REP_DB=TREMBL Accession /GB=D72834 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk109h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK109H6R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK109H6R CEK109H6R_rc /REP_DB=TREMBL Accession /GB=D72834 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk109h6 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:173293_AT
ttcccaaggtgcttcccggataattggtggtgacggtggaggttcaccaccattacaaac
cagttggagcaggattttgtgattggagcggaggatgagcagcagtttccacttcatccg
cctgatttgtagaacgcggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCAAGGTGCTTCCCGGATAATT 79 697 17 Antisense
AGGTGCTTCCCGGATAATTGGTGGT 119 1 23 Antisense
GCTTCCCGGATAATTGGTGGTGACG 502 305 27 Antisense
GATAATTGGTGGTGACGGTGGAGGT 75 421 35 Antisense
GTTCACCACCATTACAAACCAGTTG 66 445 58 Antisense
AAACCAGTTGGAGCAGGATTTTGTG 684 125 73 Antisense
GGATTTTGTGATTGGAGCGGAGGAT 227 509 88 Antisense
GGAGCGGAGGATGAGCAGCAGTTTC 52 521 101 Antisense
CACTTCATCCGCCTGATTTGTAGAA 287 197 126 Antisense
TTCATCCGCCTGATTTGTAGAACGC 193 687 129 Antisense
TCCGCCTGATTTGTAGAACGCGGTG 501 593 133 Antisense
Sequence Source Affymetrix Proprietary Database