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[173292_at]

Description CEK059EXR_rc /REP_DB=TREMBL Accession /GB=D65581 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk59e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 48      6grp_total > 59      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2723
1 2 3 4 range
A 5064.7
(-3)
P 		5238.3
(-1.8)
P 		5932.1
(3)
P 		5652.6
(1.1)
P 		867
B 4661.7
(-3)
P 		5781.4
(0.3)
P 		5583
(-0.3)
P 		6722.2
(3)
P 		2061
C 4563.7
(-3)
P 		4787.7
(-2.5)
P 		5869.8
(-0.1)
P 		7286.3
(3)
P 		2723
avr 4763.4
(-3) 		5269.1
(-1.3) 		5795
(0.5) 		6553.7
(3) 		1790

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3478
1 2 3 4 5 6 range
A 3274.5
(-3)
P 		5206.1
(3)
P 		4505.6
(0.8)
P 		4556
(1)
P 		3471.7
(-2.4)
P 		4957
(2.2)
P 		1932
B 4798.4
(1.1)
P 		4027.2
(-1)
P 		3261
(-3)
P 		3319.8
(-2.8)
P 		4481.6
(0.2)
P 		5515.8
(3)
P 		2255
C 6090.9
(3)
P 		2613.2
(-3)
P 		4796.2
(0.8)
P 		2820.3
(-2.6)
P 		5911.7
(2.7)
P 		5298
(1.6)
P 		3478
avr 4721.3
(1.1) 		3948.8
(-1.6) 		4187.6
(-0.8) 		3565.4
(-3) 		4621.7
(0.7) 		5256.9
(3) 		1692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1218
1 2 3 4 range
A 1844.1
(3)
P 		1137.1
(-1.2)
P 		1550.8
(1.3)
P 		827.4
(-3)
P 		1017
B 1486.6
(3)
P 		1427.9
(1.2)
P 		1293.7
(-3)
P 		1432.5
(1.3)
P 		193
C 1510.7
(-0.9)
P 		1376.5
(-1.9)
P 		2045.8
(3)
P 		1228.6
(-3)
P 		817
avr 1613.8
(2.8) 		1313.8
(-1.1) 		1630.1
(3) 		1162.8
(-3) 		467

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1690
1 2 3 4 5 6 range
A 603.6
(-3)
P 		1851.6
(3)
P 		981.2
(-1.2)
P 		1155.5
(-0.3)
P 		1047.6
(-0.9)
P 		1206.9
(-0.1)
P 		1248
B 1669.6
(1.2)
P 		1340.5
(-0.4)
P 		791.9
(-3)
P 		879.3
(-2.6)
P 		1820.8
(1.9)
P 		2056.8
(3)
P 		1265
C 2257.6
(3)
P 		797.4
(-2.2)
P 		1220.7
(-0.7)
P 		567.2
(-3)
P 		1912.9
(1.8)
P 		1773.6
(1.3)
P 		1690
avr 1510.3
(1.8) 		1329.8
(0.4) 		997.9
(-2) 		867.3
(-3) 		1593.8
(2.4) 		1679.1
(3) 		812
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27600
Sequence Type Exemplar sequence
Representative Public ID CEK059EXR NCBI
Target Description CEK059EXR_rc /REP_DB=TREMBL Accession /GB=D65581 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk59e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK059EXR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK059EXR CEK059EXR_rc /REP_DB=TREMBL Accession /GB=D65581 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk59e10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:9829-10339(+) 82.5 82.5
Sequence
Target Sequence 
>C. ELEGANS:173292_AT
ttccttcacttaggcttttatattattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnag
ttaaggttacaggacatcagtgatattgaagatatgaatatagagatattcctgggttag
aatttgactcttatataaaatcactagatcaattaagtttaggtgaaccacgtttattag
aagttgataatcgttgtgttattccttgtgatactaacattcgttntngtattacatctg
ctgatgttattcatgcttgggcattaaattctttatctgtaaaattagatgctataagag
gaattttaagaacatttagttacaggtttcctatagtgggagttttttatggtcaatgtt
cagagatttgtggagcaaatcatagttttataccaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCACTTAGGCTTTTATATTA 673 697 177 Antisense
AAGGTTACAGGACATCAGTGATATT 693 159 239 Antisense
TTCCTGGGTTAGAATTTGACTCTTA 532 697 285 Antisense
GGTGAACCACGTTTATTAGAAGTTG 672 497 338 Antisense
GATAATCGTTGTGTTATTCCTTGTG 42 423 362 Antisense
ATTCCTTGTGATACTAACATTCGTT 128 7 377 Antisense
CTGCTGATGTTATTCATGCTTGGGC 181 237 414 Antisense
ATGCTTGGGCATTAAATTCTTTATC 216 41 429 Antisense
GAACATTTAGTTACAGGTTTCCTAT 665 349 486 Antisense
AGTGGGAGTTTTTTATGGTCAATGT 254 57 511 Antisense
GGAGCAAATCATAGTTTTATACCAA 698 519 548 Antisense
Sequence Source Affymetrix Proprietary Database