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[173291_at]

Description CEK110A8R_rc /REP_DB=TREMBL Accession /GB=D72842 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 08      6grp_total > 51      4grp_total > 24      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4507
1 2 3 4 range
A 19415.2
(-0.2)
P
17932.3
(-3)
P
21148.6
(3)
P
20117.7
(1.1)
P
3216
B 17099.7
(-3)
P
19599.9
(0.3)
P
20639.1
(1.7)
P
21606.8
(3)
P
4507
C 17620.9
(-3)
P
19565.4
(0.3)
P
18747.8
(-1.1)
P
21195.5
(3)
P
3575
avr 18045.3
(-3)
19032.5
(-1)
20178.5
(1.4)
20973.3
(3)
2928

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8285
1 2 3 4 5 6 range
A 19236.8
(-1.1)
P
18360.4
(-1.8)
P
24241.2
(3)
P
19460.6
(-0.9)
P
17756.6
(-2.3)
P
16845.3
(-3)
P
7396
B 19281.3
(0.5)
P
18474
(-0.3)
P
21643.8
(3)
P
18992.4
(0.2)
P
15956
(-3)
P
16281.4
(-2.7)
P
5688
C 16577.1
(-2.5)
P
19170.4
(0.5)
P
20073.2
(1.5)
P
21386.3
(3)
P
17566.7
(-1.4)
P
16154
(-3)
P
5232
avr 18365.1
(-0.9)
18668.3
(-0.6)
21986.1
(3)
19946.4
(0.8)
17093.1
(-2.3)
16426.9
(-3)
5559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4124
1 2 3 4 range
A 7069.1
(3)
P
3892.6
(-1.6)
P
5528.6
(0.8)
P
2944.8
(-3)
P
4124
B 5453
(3)
P
4840.7
(-1.3)
P
4782.6
(-1.7)
P
4604.4
(-3)
P
849
C 5833
(1.6)
P
5625.2
(1.2)
P
6534.2
(3)
P
3573.9
(-3)
P
2960
avr 6118.4
(3)
4786.2
(-0.3)
5615.1
(1.7)
3707.7
(-3)
2411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3163
1 2 3 4 5 6 range
A 3546.2
(-3)
P
6529.9
(3)
P
5279.2
(0.5)
P
4935.7
(-0.2)
P
5358.2
(0.6)
P
4101.3
(-1.9)
P
2984
B 6709
(3)
P
6149.2
(1)
P
5255.8
(-2.2)
P
5030.4
(-3)
P
6482.7
(2.2)
P
6071.2
(0.7)
P
1679
C 6144.4
(3)
P
5849.5
(2)
P
5109
(-0.4)
P
4300.8
(-3)
P
5684.3
(1.5)
P
5407.7
(0.6)
P
1844
avr 5466.5
(0)
6176.2
(3)
5214.7
(-1.1)
4755.6
(-3)
5841.7
(1.6)
5193.4
(-1.2)
1421
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27973
Sequence Type Exemplar sequence
Representative Public ID CEK110A8R NCBI
Target Description CEK110A8R_rc /REP_DB=TREMBL Accession /GB=D72842 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk110a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027795(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_001027795 NCBI Caenorhabditis elegans Y82E9BR.3 (Y82E9BR.3) mRNA, complete cds. 10/11 None
Y82E9BR.3.2 ENSEMBL cdna:known chromosome:CEL140:III:1419143:1419859:1 gene:Y82E9BR.3 11/11 None
Y82E9BR.3.1 ENSEMBL cdna:known chromosome:CEL140:III:1419180:1419859:1 gene:Y82E9BR.3 11/11 None
Y82E9BR.3.4 ENSEMBL cdna:known chromosome:CEL140:III:1419184:1419904:1 gene:Y82E9BR.3 10/11 None
Y82E9BR.3.3 ENSEMBL cdna:known chromosome:CEL140:III:1419192:1419863:1 gene:Y82E9BR.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008912 5/11 Cross Hyb Matching Probes None
GENEFINDER00000008935 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1419194-1419828(+) 97.74 97.74
Public Domain and Genome References
Gene Title
Ensembl Y82E9BR.3
Entrez Gene 175299 Entrez gene
SwissProt Q9BKS0 EMBL-EBI
WormBase CE27044 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589664_S_AT similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c, isoform 1 cfa
CANINE_2:CFA.685.1.S1_S_AT similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c, isoform 1 cfa
CHICKEN:GGA.1254.1.S1_A_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 gga
HG-U133A:208972_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HG-U133_PLUS_2:208972_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HG-U133A_2:208972_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HG-FOCUS:208972_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HUGENEFL:D13118_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
U133_X3P:G5262506_3P_A_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HG-U95AV2:38076_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HG-U95D:88330_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
HU35KSUBC:RC_AA083351_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 hs
MU11KSUBA:L19737_F_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MU11KSUBB:MSA.9697.0_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MU11KSUBB:MSA.24227.0_F_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MU11KSUBB:MSA.21817.0_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MG-U74AV2:161324_R_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MOE430A:1416020_A_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MOUSE430A_2:1416020_A_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MOUSE430_2:1416020_A_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MOE430B:1444874_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MOUSE430_2:1444874_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MG-U74AV2:96032_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 mm
MG-U74CV2:165501_R_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1, mRNA (cDNA clone MGC:6436 IMAGE:3601516) mm
MU11KSUBB:MSA.24253.0_F_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1, mRNA (cDNA clone MGC:6436 IMAGE:3601516) mm
RG-U34A:D13123_S_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 rn
RAE230A:1367599_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 rn
RAT230_2:1367599_AT ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK26152 Hypothetical protein Y82E9BR.3 [Caenorhabditis elegans] ref|NP_001022966.1| Y82E9BR.3 [Caenorhabditis elegans] emb|CAE66435.1| Hypothetical protein CBG11706 [Caenorhabditis briggsae] 3.0E-37
blast BAA21841.1 ATP synthase subunit [Caenorhabditis elegans] dbj|BAA13165.1| ATP synthase subunit [Caenorhabditis elegans] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002379 EMBL-EBI H+-transporting two-sector ATPase, C subunit 3.9E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022966.1 2 55-77,92-114
Y82E9BR.3.2 2 55-77,92-114
Y82E9BR.3.1 2 55-77,92-114
Y82E9BR.3.4 2 55-77,92-114
Y82E9BR.3.3 2 55-77,92-114
Sequence
Target Sequence
>C. ELEGANS:173291_AT
tcgctctccgcatggagaacgccgtcgctgcccgcatgatcagcaccaccgtcgcccgca
aggacatcgactctgctgccaagtacatcggagctggagccgccaccgttggagtcgctg
gatctggagccggtatcggaaacgtcttcggagccctcgtcatcggatacgcccgtaacc
catccctcaagcaacagctcttctcgtacgccatccttggattcgctctctccgaggcca
tgggactgttctgcttgactatgggtttcatgatcttgttcgctctctaaatgttctgtt
ttatagccgannnnngttttnnnnnnnnnnnnnnnnnnnngaagtcctctccaacgtcta
aattcttcataacaacaaagaacgtaggctgcggtgtcggatcttcaaactcagtaatct
attagttcgaataaaatccttcgactagccaccttgtataactc


BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TCGCTCTCCGCATGGAGAACGCCGT 602 591 86 Antisense
GACTCTGCTGCCAAGTACATCGGAG 56 375 154 Antisense
CGTTGGAGTCGCTGGATCTGGAGCC 583 247 192 Antisense
GAGCCGGTATCGGAAACGTCTTCGG 593 385 212 Antisense
GACTGTTCTGCTTGACTATGGGTTT 548 375 329 Antisense
ATGGGTTTCATGATCTTGTTCGCTC 180 51 346 Antisense
TGTTCGCTCTCTAAATGTTCTGTTT 250 563 362 Antisense
CCTCTCCAACGTCTAAATTCTTCAT 431 267 431 Antisense
AGAACGTAGGCTGCGGTGTCGGATC 685 71 464 Antisense
GGTGTCGGATCTTCAAACTCAGTAA 542 497 478 Antisense
TTCGACTAGCCACCTTGTATAACTC 193 695 525 Antisense
Sequence Source Affymetrix Proprietary Database